Journal Article
The complete mitochondrial genome and phylogenetic analysis of Sinocyclocheilus angularis (Cypriniformes: Cyprinidae)
Luo, Q. and Zhang, R.
Record Number:
5580
Year:
2021
Journal:
Mitochondrial DNA Part B
Pages:
3438-3439
Volume:
6:12
Notes:
Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is cited
Abstract:
This is the first study to determine the complete mitochondrial genome of Sinocyclocheilus angularis,
which is an endemic cavefish native to the Karst region of the Yunnan-Guizhou Plateau. The complete
mitochondrial genome size of S. angularis was 16,586 bp, and it consisted of a control region, 13 protein-
coding genes, 22 transfer RNA genes, and 2 ribosomal RNA genes. The base composition of the
mitogenome was 25.14% A, 32.45% T, 27.10% G, and 15.31% C, with an overall GC content of 42.42%.
Phylogenetic analysis revealed that all Sinocyclocheilus were clustered into one strong clade and S.
angularis was very closely related to S. bicornutus. It will provide an essential genetic tool for the further
evolutionary studies and conservation of genus Sinocyclocheilus.
Times Cited:
1
Relevent Species:
Related Records:
Zheng, J. Z. and Wang, J. (1990)
Description of a new species of the genus Sinocyclocheilus from China (Cypriniformes: Cyprinidae)
Chen, Y.R. and Yang, J.X. (1993)Species and origin of cave dwelling Sinocyclocheilus fishes
Chen, Y.R. and Yang, J.X. (1993)A synopsis of cavefishes from China
Wang, D. and Chen, Y.Y. (1998)On the diagnosis of Sinocyclocheilus and the taxonomic position of its closely related genus Anchicyclocheilus (Cypriniformes: Cyprinidae: Barbinae)
Xiao, H, Zhang, R, Feng, J, Ou, Y., M, Li, W, Chen, S and Zan, R (2002)Nuclear DNA content and ploidy of seventeen species of fishes in Sinocyclocheilus
Zhao, Y.H. and Zhang, C.G. (2009)Endemic fishes of Sinocyclocheilus (Cypriniformes: Cyprinidae) in China - Species diversity, cave adaptation, systematics and zoogeography
Romero, A., Zhao, Y.H. and Chen, X.Y. (2009)The hypogean fishes of China
Zhao, Y.H., Gozlan, R.E. and Zhang, C.G. (2011)Out of sight out of mind: current knowledge of Chinese cave fishes
Zhang, C.G. and Zhou, Y.H. (2016)Species diversity and distribution of inland fishes in China
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