Journal Article
Mitochondrial genome diversity of Schistura McClelland, 1838 (Teleostei, Nemacheilidae)
Peng, X., Xu, B., Chen, C., Xiao, T. and Su, J.
Record Number:
6488
Year:
2024
Journal:
Diversity
Volume:
16, 494
Abstract:
The inconsistency between traditional morphological taxonomy and molecular phylogenetic data is a major issue that puzzles the study of fish classification and evolution. Although mitochondrial genes are commonly used in phylogenetic analyses to compare fish species, the mitochondrial evolution and diversity of Schistura are still not well understood. To better understand the evolution of Schistura, we sequenced the mitochondrial genome of Schistura fasciolata and compared it with other species of Schistura. A 16,588 bp circular mitochondrial genome of S. fasciolata was obtained and it contains 13 protein-coding, 22 transfer RNA, and two ribosomal RNA genes, and a non-coding control region. The gene arrangement in the mitochondrial genomes of all Schistura species was consistent. However, we also found that S. fasciolata was not monophyletic. Although mitochondrial genes can be effectively used for Schistura species identification, they may not be suitable for inferring the evolutionary process of Schistura species. These results provide support for the use of mitochondrial genes in identifying Schistura species, and also serve as a warning against mistakenly using them to evaluate the evolution process of Schistura species.
Keywords:
loach; mitochondrial genome; evolution; genetic diversity; species identification
Times Cited:
11
Relevent Species:
Schistura mobbsi Kottelat and Leisher 2012Schistura kaysonei Vidthayanon and Jaruthanin 2002Schistura deansmarti Vidthayanon and Kottelat 2003Schistura spekuli Kottelat 2004Schistura papulifera Kottelat, Harries and Proudlove 2007Schistura oedipus (Kottelat, 1988) Kottelat 1990Schistura sijuensis (Menon 1987) Kottelat 1990Schistura jarutanini Kottelat 1990Schistura spiesi Vidthayanon and Kottelat 2003Schistura larketensis Choudhury, Mukhim, Basumatary, Warbah and Sarma 2017Schistura sonarengaensis Mukhim, Sarma, Choudhury, Chandran, Das, Singh, Warbah, Kumar Sarkar and Sarma 2024
Related Records:
Kemp, S. and Chopra, B. (1924)
The Siju Cave, Garo Hills, Assam
Andrewes, H.E. (1924)Coleoptera of the Siju Cave, Garo Hills, Assam. I Carabidae
Hora, S. L. (1924)Fishes of the Siju Cave, Garo Hills, Assam
Annandale, N. and Chopra, B., (1924)Molluscs of the Siju Cave, Garo Hills, Assam
Blair, K.G. (1924)Coleoptera of the Siju Cave, Garo Hills, Assam. IV Histeridae, Hydrophilidae, Erotylidae, Lathridiidae, Tenebrionidae and Hylophilidae
Brunetti, E, (1924)Diptera of the Siju Cave, Garo Hills, Assam. I Tipulidae, Tabanidae, Anthomyidae, Acalyptrate Muscidae and Phoridae
Cameron, M. (1924)Coleoptera of the Siju Cave, Garo Hills, Assam. II New species of Staphylinidae
Carpenter, G.H. (1924)Collembola of the Siju Cave, Garo Hills, Assam
Chopard, L. (1924)On some cavernicolous Orthoptera and Dermaptera from Assam and Burma
Chopra, B. (1924)Isopoda of the Siju Cave, Garo Hills, Assam
Edwards, F.W. (1924)Diptera of the Siju Cave, Garo Hills, Assam. II Chironomidae
Fage, L. (1924)Araneids from the Siju Cave, Garo Hills, Assam
Fletcher, T.B. (1924)Lepidoptera of the Siju Cave, Garo Hills, Assam. I Pyralidae
Fleutiaux, E. (1924)Coleoptera of the Siju Cave, Garo Hills, Assam. III Elateridae
Gravely, F.H. (1924)Tartarides from the Siju Cave, Garo Hills, Assam. Records of the Indian Museum
Kemp, S. (1924)Notes on the mammals of the Siju Cave, Garo Hills, Assam
Kemp, S. (1924)Crustacea Decapoda of the Siju Cave, Garo Hills, Assam
Kemp, S. and China, W.E. (1924)Rhynchota of the Siju Cave, Garo Hills, Assam
Lamb, C.G. (1924)Diptera of the Siju Cave, Garo Hills, Assam. III Dolichopodidae
Meyrick, E. (1924)Lepidoptera of the Siju Cave, Garo Hills, Assam. II Tineidae
Patton, W.S. (1924)Diptera of the Siju Cave, Garo Hills, Assam. IV Nycteribiidae
Roewer, C.F. (1924)Opiliones aus der Siju-hohle in den Garo-Hills im Assam
Rohwer, S.A. (1924)Hymenoptera of the Siju Cave, Garo Hills, Assam. II Description of a new Braconid
Silvestri, F. (1924)Myriapoda from the Siju Cave, Garo Hills, Assam
Stephenson, J. (1924)Oligochaeta of the Siju Cave, Garo Hills, Assam.
Wheeler, W.M. (1924)Hymenoptera of the Siju Cave, Garo Hills, Assam. I Triglyphothrix striatidens Emery as a cave ant
Ochs, G. (1925)Descriptions of new asiatic Gyrinidae
Hora, S. L. (1935)Notes on fishes in the Indian Museum. Part 24. Loaches of the genus Nemacheilus from eastern Himalayas, with the description of a new species from Burma and Siam
Pillai, R. S. and Yazdani, G. M. (1977)Ichthyo-fauna of the Garo Hills, Meghalaya (India)
Menon, A. G. K. (1987)Noemacheilus sijuensis sp. nov
Kottelat, M. (1988)Two species of cavefishes from northern Thailand in the genera Nemachilus and Homaloptera (Osteichthyes, Homalopteridae)
Kottelat, M. (1990)New species and populations of cave nemacheilines in south and south-east Asia (Osteichthyes, Balitoridae)
Kottelat, M. (1990)New species and populations of cave nemacheilines in south and south-east Asia (Osteichthyes, Balitoridae)
Kottelat, M. (1990)New species and populations of cave nemacheilines in south and south-east Asia (Osteichthyes, Balitoridae)
Talwar, P. K. and Jhingran, A. G. (1992)Nemacheilus sijuensis (Menon)
Brooks, S.J. and Smart, C.M. (1995)Caving in the abode of the clouds. The caves and karst of Meghalaya, North East India
Kottelat, M. and Brehier, F. (1999)Troglocyclocheilus khammouanensis, a new genus and species of cave fish from the Khammouan karst, Laos (Teleostei: Cyprinidae)
Sinha, Y.P. (1999)Bats of the Siju Cave, South Garo Hills District, Meghalaya, India: taxonomy and bionomics
Waltham, A.C. and Middleton, J. (2000)The Khammouan karst of Laos
Deharveng, L. and Bedos, A. (2001)Thailande
Deharveng, L. and Bedos, A. (2001)Thailande
Deharveng, L. and Bedos, A. (2001)Thailande
Deharveng, L. and Bedos, A. (2001)Thailande
Besson, J.P., Deharveng, L. and Brehier, F. (2001)Laos
Borowsky, R. and Mertz, L. (2001)Genetic differentiation among populations of cave fish Schistura oedipus (Cypriniformes: Balitoridae)
Borowsky, R.L. and Vidthayanon, C. (2001)Nucleotide diversity in populations of balitorid cave fishes from Thailand
Borowsky, R.L. and Vidthayanon, C. (2001)Nucleotide diversity in populations of balitorid cave fishes from Thailand
Trajano, E., Mugue, N., Krejca, J., Vidthayanon, C., Smart, D. and Borowsky, R. (2002)Habitat, distribution, ecology and behaviour of cave balitorids from Thailand (Teleostei: Cypriniformes)
Trajano, E., Mugue, N., Krejca, J., Vidthayanon, C., Smart, D. and Borowsky, R. (2002)Habitat, distribution, ecology and behaviour of cave balitorids from Thailand (Teleostei: Cypriniformes)
Vidthayanon, C and Jaruthanin, K (2002)Schistura kaysonei, (Teleostei: Balitoridae) a new cave fish from the Khammouan karst, Laos PDR
Vidthayanon, C. and Kottelat, M. (2003)Three new species of fishes from Tham Phra Wang Daeng and Tham Phra Sai Ngam caves in northern Thailand (Teleostei: Cyprinidae and Balitoridae)
Vidthayanon, C. and Kottelat, M. (2003)Three new species of fishes from Tham Phra Wang Daeng and Tham Phra Sai Ngam caves in northern Thailand (Teleostei: Cyprinidae and Balitoridae)
Kottelat, M. (2004)Schistura spekuli, a new species of cave fishes deom northern Vietnam (Teleostei: Balitoridae)
Kottelat, M., Harries, D.R. and Proudlove, G.S. (2007)Schistura papulifera, a new species of cave loach from Meghalaya, India (Teleostei: Balitoridae)
Kottelat, M., Harries, D.R. and Proudlove, G.S. (2007)Schistura papulifera, a new species of cave loach from Meghalaya, India (Teleostei: Balitoridae)
Harries, D.B., Ware, F.J., Fischer, C.W., Biswas, J. and Kharpran-Daly, B.D. (2008)A review of the biospeleology of Meghalaya, India
Harries, D.B., Ware, F.J., Fischer, C.W., Biswas, J. and Kharpran-Daly, B.D. (2008)A review of the biospeleology of Meghalaya, India
Harries, D.B., Ware, F.J., Fischer, C.W., Biswas, J. and Kharpran-Daly, B.D. (2008)A review of the biospeleology of Meghalaya, India
Biswas, J. (2009)The biodiversity of Krem Mawkhyrdop of Megalhaya, India, on the verge of extinction
Biswas, J. (2009)The biodiversity of Krem Mawkhyrdop of Megalhaya, India, on the verge of extinction
Ellis, M. (2010)The caves of Phitsanulok
Ramanujam, S.N., Manorama, M. and Dey, S. (2010)Ichthyodiversity of Meghalaya, India
Ramanujam, S.N., Manorama, M. and Dey, S. (2010)Ichthyodiversity of Meghalaya, India
Gebauer, H.D. (2011)Resources on the speleology of Meghalaya state, India, Part 3: West Khasi Hills
Gebauer, H.D. (2011)Resources on the speleology of Meghalaya state, India, Part 3: West Khasi Hills
Kottelat, M. and Leisher, C. (2012)Fishes from Phuong Hoang cave, northern Vietnam, with description of a new species of loach (Teleostei: Nemacheilidae)
Kottelat, M. (2012)Draconectes narinosus, a new genus and species of cave fish from an island of Halong Bay, Vietnam (Teleostei: Nemacheilidae).
Kottelat, M. (2012)Conspectus cobitidum: An inventory of the loaches of the world (Teleostei: Cypriniformes: Cobitoidei)
Duboue, E.R. and Borowsky, R. (2012)Altered rest-activity patterns evolve via circadian independent mechanisms in cave adapted balitorid loaches
Duboue, E.R. and Borowsky, R. (2012)Altered rest-activity patterns evolve via circadian independent mechanisms in cave adapted balitorid loaches
Duboue, E.R. and Borowsky, R. (2012)Altered rest-activity patterns evolve via circadian independent mechanisms in cave adapted balitorid loaches
Kottelat, M. (2012)Conspectus cobitidum: An inventory of the loaches of the world (Teleostei: Cypriniformes: Cobitoidei)
Kottelat, M. (2012)Draconectes narinosus, a new genus and species of cave fish from an island of Halong Bay, Vietnam (Teleostei: Nemacheilidae).
Tringham, M. (2012)The geology of the Kopili area in relation to its caves
Tringham, M. (2012)The geology of the Kopili area in relation to its caves
Kottelat, M. (2012)Draconectes narinosus, a new genus and species of cave fish from an island of Halong Bay, Vietnam (Teleostei: Nemacheilidae).
Kottelat, M. (2012)Conspectus cobitidum: An inventory of the loaches of the world (Teleostei: Cypriniformes: Cobitoidei)
Brancelj, A., Boonyanusith, C., Watiroyram, S. and Sanoamuang, L. (2013)The groundwater-dwelling fauna of Southeast Asia
Brancelj, A., Boonyanusith, C., Watiroyram, S. and Sanoamuang, L. (2013)The groundwater-dwelling fauna of Southeast Asia
Brancelj, A., Boonyanusith, C., Watiroyram, S. and Sanoamuang, L. (2013)The groundwater-dwelling fauna of Southeast Asia
Brancelj, A., Boonyanusith, C., Watiroyram, S. and Sanoamuang, L. (2013)The groundwater-dwelling fauna of Southeast Asia
Brancelj, A., Boonyanusith, C., Watiroyram, S. and Sanoamuang, L. (2013)The groundwater-dwelling fauna of Southeast Asia
Khynriam, D and Sen, N (2014)Taxonomic Study on Nemacheiline Loaches of North East India
Khynriam, D and Sen, N (2014)Taxonomic Study on Nemacheiline Loaches of North East India
Khynriam, D and Sen, N (2014)Taxonomic Study on Nemacheiline Loaches of North East India
Gebauer, H.D. (2015)Resources on the speleology of Meghalaya State, India, Part 6: Lumshnong (East Jaintia Hills)
Gebauer, H.D. (2015)Resources on the speleology of Meghalaya State, India, Part 6: Lumshnong (East Jaintia Hills)
Absar, P.F., Mitra, S. and Kharkongor, I.J. (2017)Teretamon spelaeum, a new species of freshwater crab (Crustacea: Decapoda: Potamidae) from a limestone cave in Meghalaya, India
Choudhury, H., Mukhim, D.K.B., Basumatary, S., Warbah, D.P. and Sarma, D. (2017)Schistura larketensis, a new cavernicolous fish (Teleostei: Nemacheilidae)
from Meghalaya, Northeast India
Choudhury, H., Mukhim, D.K.B., Basumatary, S., Warbah, D.P. and Sarma, D. (2017)Schistura larketensis, a new cavernicolous fish (Teleostei: Nemacheilidae)
from Meghalaya, Northeast India
Absar, P.F., Mitra, S. and Kharkongor, I.J. (2017)Teretamon spelaeum, a new species of freshwater crab (Crustacea: Decapoda: Potamidae) from a limestone cave in Meghalaya, India
Absar, P.F., Mitra, S. and Kharkongor, I.J. (2017)Teretamon spelaeum, a new species of freshwater crab (Crustacea: Decapoda: Potamidae) from a limestone cave in Meghalaya, India
Saikia, U., Thabah, A., Chachula, O.M. and Ruedi, M. (2018)The bat fauna of Meghalaya, northeast India: Diversity and conservation
Ellis, M. (2018)The recorded fauna of the limestone caves of Thailand to April 2018
Ellis, M. (2018)The recorded fauna of the limestone caves of Thailand to April 2018
Ellis, M. (2018)The recorded fauna of the limestone caves of Thailand to April 2018
Ellis, M. (2018)The recorded fauna of the limestone caves of Thailand to April 2018
Saikia, U., Thabah, A., Chachula, O.M. and Ruedi, M. (2018)The bat fauna of Meghalaya, northeast India: Diversity and conservation
Harries, D., Kharkongor, I.J. and Saikia, U. (2020)The biota of Siju Cave, Meghalaya, India: a comparison of biological records from 1922 and from 2019
Ellis, M. (2020)The caves of western and central Thailand
Ellis, M. (2020)The caves of northern Thailand
Ellis, M. (2020)The caves of western and central Thailand
Ellis, M. (2020)The caves of western and central Thailand
Hajong, P., Wanlambok Sanglyne, M., Dirborne, C.M., Koch, U. and Ramanujam, P. (2021)Diversity and distribution of algae in cave ecosystems of Meghalaya: An overview
Hajong, P., Wanlambok Sanglyne, M., Dirborne, C.M., Koch, U. and Ramanujam, P. (2021)Diversity and distribution of algae in cave ecosystems of Meghalaya: An overview
Kosygin, L., Laskar, B.A. and Khynriam, D. (2023)Cavefishes of Meghalaya
Kosygin, L., Laskar, B.A. and Khynriam, D. (2023)Cavefishes of Meghalaya
Kosygin, L., Laskar, B.A. and Khynriam, D. (2023)Cavefishes of Meghalaya
Marak, W.K. and Singh, Y.L. (2023)Osteology of incomplete lateral lined schisturid loaches of Meghalaya: a comparative account
Marak, W.K. and Singh, Y.L. (2023)Osteology of incomplete lateral lined schisturid loaches of Meghalaya: a comparative account
Marak, W.K. and Singh, Y.L. (2023)Osteology of incomplete lateral lined schisturid loaches of Meghalaya: a comparative account
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Kharkongor, I.J., Saikia, U., Khynriam, D. and Saikia, B. (2023)Current status of faunal diversity of Siju Cave, South Garo Hills, Meghalaya
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Peng, X., Xu, B., Chen, C., Xiao, T. and Su, J. (2024)Mitochondrial genome diversity of Schistura McClelland, 1838 (Teleostei, Nemacheilidae)
Peng, X., Xu, B., Chen, C., Xiao, T. and Su, J. (2024)Mitochondrial genome diversity of Schistura McClelland, 1838 (Teleostei, Nemacheilidae)
Peng, X., Xu, B., Chen, C., Xiao, T. and Su, J. (2024)Mitochondrial genome diversity of Schistura McClelland, 1838 (Teleostei, Nemacheilidae)
Peng, X., Xu, B., Chen, C., Xiao, T. and Su, J. (2024)Mitochondrial genome diversity of Schistura McClelland, 1838 (Teleostei, Nemacheilidae)
Peng, X., Xu, B., Chen, C., Xiao, T. and Su, J. (2024)Mitochondrial genome diversity of Schistura McClelland, 1838 (Teleostei, Nemacheilidae)
Peng, X., Xu, B., Chen, C., Xiao, T. and Su, J. (2024)Mitochondrial genome diversity of Schistura McClelland, 1838 (Teleostei, Nemacheilidae)
Peng, X., Xu, B., Chen, C., Xiao, T. and Su, J. (2024)Mitochondrial genome diversity of Schistura McClelland, 1838 (Teleostei, Nemacheilidae)
Peng, X., Xu, B., Chen, C., Xiao, T. and Su, J. (2024)Mitochondrial genome diversity of Schistura McClelland, 1838 (Teleostei, Nemacheilidae)
Peng, X., Xu, B., Chen, C., Xiao, T. and Su, J. (2024)Mitochondrial genome diversity of Schistura McClelland, 1838 (Teleostei, Nemacheilidae)
Peng, X., Xu, B., Chen, C., Xiao, T. and Su, J. (2024)Mitochondrial genome diversity of Schistura McClelland, 1838 (Teleostei, Nemacheilidae)
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