Journal Article
Evolutionary history of Chinese karst loaches (Nemacheilidae, Karstsinnectes): new insights from mitochondrial-based genomes and description of a new species from Guangxi, China
Luo, T., Luo, F.W., Lan, C.T., Xiao, M.Y., Zhou, J.J., Liao, M., Xiao, N. and Zhou, J.
Record Number:
6769
Year:
2024
Journal:
Zoosystematics and Evolution
Pages:
1473-1486
Volume:
100
Notes:
Copyright Luo, T. et al. 2024. This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium
Abstract:
The genus Karstsinnectes of blind fishes known as karst loaches from China was established in 2023 during a revision of the genus Oreonectes (Nemacheilidae). Six species are recorded in this study and some taxonomic progress has been made; however, the lack of genetic data for some species (e.g., K. anophthalmus) may have weakened our current understanding of Karstsinnectes. This study reassessed the phylogeny and evolutionary history of Karstsinnectes by integrating a combination of previously published and newly sequenced mitochondrial genomic data. A phylogenetic tree was developed that was able to divide Karstsinnectes into two clades corresponding to drainages and clarify the phylogenetic position of K. anophthalmus. Divergence times show that Karstsinnectes originated at the Oligocene/Miocene boundary (~22.37 Mya), with the most recent common ancestor occurring in the early Miocene (~18.87 Mya) and interspecific divergence occurring in the late Miocene. Ancestral area reconstruction suggests that the most recent common ancestor of Karstsinnectes most likely inhabited the Hongshui River basin and dispersed into the Zuojiang-Yujiang, Beipanjiang, and Youjiang river basins during the early Miocene (~18.87 Mya), middle Miocene (~12.78 Mya), and late Miocene (~6.71 Mya), respectively. The dispersal under the influence of orogenesis and a monsoon climate drove the speciation and diverse distribution of Karstsinnectes. Such findings are important for conservation considering that Karstsinnectes strictly inhabits deep caves. Additionally, the taxonomic status of the distributed Karstsinnectes population in Leiping Town, Daxin County, Guangxi, China was revised by combining genetic and morphological differences to describe this population as a new species, Karstsinnectes daxinensis Luo, Zhou & Zhou, sp. nov. The definition of the phylogenetic position of K. anophthalmus emphasizes the importance of using type locality material for the identification of cryptic species.
Times Cited:
7
Relevent Species:
Karstsinnectes anophthalmus (Zheng 1981) Luo et al. 2023Karstsinnectes acridorsalis (Lan in Lan, Gan, Wu and Yang 2013) Luo et al 2023Karstsinnectes hyalinus (Lan, Yang and Chen 1996)Karstsinnectes parvus (Zhu and Xhu 2015) Luo et al. 2023Karstsinnectes cehengensis Luo, Zhao and Zhou 2024Karstsinnectes longzhouensis Ge, Du and Zhou 2024Karstsinnectes daxinensis Luo, Zhou and Zhou 2024
Related Records:
Zheng, J.Z. (1981)
Oreonectes anophthalmus
Zhao, Z. (1983)New discovery of cave blind fish in Wuming, Guangxi
Zhou, J. (1985)Fishes in karst caves of Guangxi
Chen, Y.R. and Yang, J.X. (1993)A synopsis of cavefishes from China
Lan, J.-H., Yang, J.X. and Chen, Y.R. (1996)One new species of cavefish from Guangxi (Cypriniformes: Cobitidae)
Yue, P. and Chen, Y. (1998)China Red Data Book of Endangered Animals. Pisces
Romero, A., Zhao, Y.H. and Chen, X.Y. (2009)The hypogean fishes of China
Zhao, Y.H., Gozlan, R.E. and Zhang, C.G. (2011)Out of sight out of mind: current knowledge of Chinese cave fishes
Kottelat, M. (2012)Conspectus cobitidum: An inventory of the loaches of the world (Teleostei: Cypriniformes: Cobitoidei)
Kottelat, M. (2012)Draconectes narinosus, a new genus and species of cave fish from an island of Halong Bay, Vietnam (Teleostei: Nemacheilidae).
Lan, J.H., Gan, X., Wu, T.J. and Yang, J. (2013)Cave fishes of Guangxi, China
Lan, J.H., Gan, X., Wu, T.J. and Yang, J. (2013)Cave fishes of Guangxi, China
Fenolio, D.B., Zhao, Y., Niemiller, M.L. and Stout, J.F. (2013)In-situ observations of seven enigmatic cave loaches and one cave barbel from Guangxi, China, with notes on conservation status
Waryani. B., Zhao, Y., Zhang, C., Abbasi, A.R., Ferrando, S., Dai, R., et al. (2015)Surface architecture of the olfactory epithelium of two Chinese cave loaches (Cypriniformes: Nemacheilidae: Oreonectes).
Zhu, Y. and Zhu, D.G. (2015)Description of a New Species of the Genus Heminoemachilus (Teleosteiļ¼Balitoridae) in Guangxi, China
Zhang, C.G. and Zhou, Y.H. (2016)Species diversity and distribution of inland fishes in China
Zhang, C.G. and Zhou, Y.H. (2016)Species diversity and distribution of inland fishes in China
Zhang, C.G. and Zhou, Y.H. (2016)Species diversity and distribution of inland fishes in China
Huang, J.Q., Yang, J., Wu, Z.Q. and Zhao, Y.H. (2019)Oreonectes guilinensis (Teleostei, Cypriniformes, Nemacheilidae), a new loach species from Guangxi, China
Liu, Z., Wen, H., Hailer, F., Dong, F., Yang, Z., Liu, T., Han, L., Shi, F., Hu, Y. and Zhou, J. (2019)Pseudogenization of Mc1r gene associated with transcriptional changes related to melanogenesis explains leucistic phenotypes in Oreonectes cavefish (Cypriniformes, Nemacheilidae)
Huang, J.Q., Yang, J., Wu, Z.Q. and Zhao, Y.H. (2019)Oreonectes guilinensis (Teleostei, Cypriniformes, Nemacheilidae), a new loach species from Guangxi, China
Liu, Z., Qian, X., Wang, Z., Wen, H., Han, L. and Zhou, J. (2021)First draft genome of loach (Orenectes shuilongensis; Cypriniformes: Nemacheilidae) provide insights into the evolution of cavefish
Zhao, L.-X., Liu, J.-H., Du, L.N. and Luo, F.G. (2021)A new loach species of Troglonectes (Teleostei: Nemacheilidae) from Guangxi, China
Luo, T., Yang, Q., Wu, L., Wang, Y.-L., Zhou, J.-J., Deng, H.Q., Xiao, N. and Zhou, J. (2023)Phylogenetic relationships of Nemacheilidae cavefish (Heminoemacheilus, Oreonectes, Yunnanilus, Paranemachilus, and Troglonectes) revealed by analysis of mitochondrial genome and seven nuclear genes
Luo, T., Yang, Q., Wu, L., Wang, Y.-L., Zhou, J.-J., Deng, H.Q., Xiao, N. and Zhou, J. (2023)Phylogenetic relationships of Nemacheilidae cavefish (Heminoemacheilus, Oreonectes, Yunnanilus, Paranemachilus, and Troglonectes) revealed by analysis of mitochondrial genome and seven nuclear genes
Luo, T., Yang, Q., Wu, L., Wang, Y.-L., Zhou, J.-J., Deng, H.Q., Xiao, N. and Zhou, J. (2023)Phylogenetic relationships of Nemacheilidae cavefish (Heminoemacheilus, Oreonectes, Yunnanilus, Paranemachilus, and Troglonectes) revealed by analysis of mitochondrial genome and seven nuclear genes
Luo, T., Luo, F.W., Lan, C.T., Xiao, M.Y., Zhou, J.J., Liao, M., Xiao, N. and Zhou, J. (2024)Evolutionary history of Chinese karst loaches (Nemacheilidae, Karstsinnectes): new insights from mitochondrial-based genomes and description of a new species from Guangxi, China
Luo, T., Luo, F.W., Lan, C.T., Xiao, M.Y., Zhou, J.J., Liao, M., Xiao, N. and Zhou, J. (2024)Evolutionary history of Chinese karst loaches (Nemacheilidae, Karstsinnectes): new insights from mitochondrial-based genomes and description of a new species from Guangxi, China
Luo, T., Luo, F.W., Lan, C.T., Xiao, M.Y., Zhou, J.J., Liao, M., Xiao, N. and Zhou, J. (2024)Evolutionary history of Chinese karst loaches (Nemacheilidae, Karstsinnectes): new insights from mitochondrial-based genomes and description of a new species from Guangxi, China
Luo, T., Luo, F.W., Lan, C.T., Xiao, M.Y., Zhou, J.J., Liao, M., Xiao, N. and Zhou, J. (2024)Evolutionary history of Chinese karst loaches (Nemacheilidae, Karstsinnectes): new insights from mitochondrial-based genomes and description of a new species from Guangxi, China
Luo, T., Luo, F.W., Lan, C.T., Xiao, M.Y., Zhou, J.J., Liao, M., Xiao, N. and Zhou, J. (2024)Evolutionary history of Chinese karst loaches (Nemacheilidae, Karstsinnectes): new insights from mitochondrial-based genomes and description of a new species from Guangxi, China
Pflughoeft, A. (2024)Pink creature with no eyes found in underground river in China. It’s a new species
Zhao, X., Lan, C., Luo, T., Yu, J., Zhou, J., Xiao, N. and Zhou, J. (2024)Karstsinnectes cehengensis (Cypriniformes: Nemacheilidae), a new species of cave fish from Guizhou, China
Ge, J.Y., Nong, Z.Q., Yang, J., Du, L.N. and Zhou, J.J. (2024)Taxonomic revision of the cavefish genus Karstsinnectes (Cypriniformes, Nemacheilidae), with a description of a new species from Guangxi Province, China
Zhao, X., Lan, C., Luo, T., Yu, J., Zhou, J., Xiao, N. and Zhou, J. (2024)Karstsinnectes cehengensis (Cypriniformes: Nemacheilidae), a new species of cave fish from Guizhou, China
Ge, J.Y., Nong, Z.Q., Yang, J., Du, L.N. and Zhou, J.J. (2024)Taxonomic revision of the cavefish genus Karstsinnectes (Cypriniformes, Nemacheilidae), with a description of a new species from Guangxi Province, China
Luo, T., Luo, F.W., Lan, C.T., Xiao, M.Y., Zhou, J.J., Liao, M., Xiao, N. and Zhou, J. (2024)Evolutionary history of Chinese karst loaches (Nemacheilidae, Karstsinnectes): new insights from mitochondrial-based genomes and description of a new species from Guangxi, China
Luo, T., Luo, F.W., Lan, C.T., Xiao, M.Y., Zhou, J.J., Liao, M., Xiao, N. and Zhou, J. (2024)Evolutionary history of Chinese karst loaches (Nemacheilidae, Karstsinnectes): new insights from mitochondrial-based genomes and description of a new species from Guangxi, China