Journal Article
Time-calibrated phylogeny of neotropical freshwater fishes
Tagliacollo, V.A., Tan, M., Reis. R.E., Gaia, R., Carrijo, V., Ranuzi, M., Craig, J.M. and Albert, J.S.
Record Number:
6827
Year:
2024
Journal:
Frontiers in Bioinformatics
Pages:
15 pages
Volume:
4:1433995
Notes:
© 2024 Tagliacollo, Tan, Reis, Gaia, Carrijo, Ranuzi, Craig and Albert. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY)
Abstract:
Neotropical Freshwater Fish (NFF) fauna exhibits the greatest phenotypic disparity and species richness among all continental aquatic vertebrate faunas, with more than 6,345 species distributed across the mostly tropical regions of Central and South America. The last two decades have seen a proliferation of molecular phylogenies, often at the species level, covering almost all 875 valid NFF genera. This study presents the most comprehensive genome-wide, time-calibrated phylogenetic hypothesis of NFF species to date, based on DNA sequences generated over decades through the collaborative efforts
of the multinational ichthyological research community. Our purpose is to build and curate an extensive molecular dataset allowing researchers to evaluate macroevolutionary hypotheses in the NFF while facilitating continuous refinement and expansion. Using thousands of DNA sequences from dozens of studies, we compiled a supermatrix of 51 markers for 5,984 taxa, representing 3,167 NFF species. Based on this dataset, we built the most species-rich timecalibrated phylogeny of the NFF taxa to date, summarizing the collective efforts of the ichthyological research community since the midpoint of the last century. We provide a summary review of this remarkable evolutionary history and
hope this dataset provides a framework for forthcoming studies of the NFF
fauna, documenting compelling, emergent patterns in the world’s most diverse
continental vertebrate fauna.
KEYWORDS
neotropics, freshwater fishes, phylogeny, divergence times, macroevoluti
Times Cited:
8
Relevent Species:
Phreatobius cisternarum Goeldi 1905Phreatobius sanguijuela Fernandez, Saucedo, Carvajal and Schaefer 2007Phreatobius dracunculus Shibatta, Muriel-Cunha and De Pinna 2007Phreatobius undescribed species Anapixi [Muriel-Cunha 2008]Phreatobius undescribed species Jaú [Muriel-Cunha 2008]Phreatobius undescribed species Tarumanzinho [Muriel-Cunha 2008]Phreatobius undescribed species Viruá [Muriel-Cunha 2008]Phreatobius undescribed species Aripuana [Muriel-Cunha 2008]
Related Records:
Goeldi, E. (1905)
Nova zoologica aus der Amazonas-Region. Neue Wirbeltiere
Fuhrmann, O. (1905)Scleropages formosum und uber Phreatobius cisternarum
Fuhrmann, O. (1905)Scleropages formosum und uber Phreatobius cisterarum
Fuhrmann, O. (1905)Scleropages formosum und uber Phreatobius cisternarum
Fuhrmann, O. (1905)Scleropages formosum und uber Phreatobius cisterarum
Fuhrmann, O. (1905)Scleropages formosum und uber Phreatobius cisternarum
Fuhrmann, O. (1905)Scleropages formosum und uber Phreatobius cisterarum
Fuhrmann, O. (1905)Scleropages formosum und uber Phreatobius cisternarum
Fuhrmann, O. (1905)Scleropages formosum und uber Phreatobius cisterarum
Goeldi, E. (1905)Nova zoologica aus der Amazonas-Region. Neue Wirbeltiere
Eigenmann, C. H. (1918)The Pygidiidae, a family of South American catfishes
Eigenmann, C. H. (1918)The Pygidiidae, a family of South American catfishes
Eigenmann, C.H. (1919)Trogloglanis pattersoni, a new blind fish from San Antonio, Texas
Eigenmann, C.H. (1919)Trogloglanis pattersoni, a new blind fish from San Antonio, Texas
Reichel, M. (1927)Etude anatomique du Phreatobius cisternarum Goeldi, Silure aveugle du Bresil
Reichel, M. (1927)Etude anatomique du Phreatobius cisternarum Goeldi, Silure aveugle du Bresil
Reichel, M. (1927)Etude anatomique du Phreatobius cisternarum Goeldi, Silure aveugle du Bresil
Reichel, M. (1927)Etude anatomique du Phreatobius cisternarum Goeldi, Silure aveugle du Bresil
Myers, G. S. (1944)Two extraordinary new blind nematognath fishes from the Rio Negro, representing a new subfamily of Pygidiidae, with a rearrangement of the genera of the family
Myers, G. S. (1944)Two extraordinary new blind nematognath fishes from the Rio Negro, representing a new subfamily of Pygidiidae, with a rearrangement of the genera of the family
Gosline, W. A. (1945)Catalogo dos nematognathos de agua-doce da America do Sol e Central
Gosline, W. A. (1945)Catalogo dos nematognathos de agua-doce da America do Sol e Central
Fowler, H.W. (1954)Os peixes de agua doce do Brasil. Vol. 2
Fowler, H.W. (1954)Os peixes de agua doce do Brasil. Vol. 2
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DeCarvalho, A.L. (1967)Novas dados para o conhecimento de Phreatobius cisternarum Goeldi (Pisces, Pygidiidae, Phreatobiinae)
DeCarvalho, A.L. (1967)Novas dados para o conhecimento de Phreatobius cisternarum Goeldi (Pisces, Pygidiidae, Phreatobiinae)
DeCarvalho, A.L. (1967)Novas dados para o conhecimento de Phreatobius cisternarum Goeldi (Pisces, Pygidiidae, Phreatobiinae)
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Henderson, P. A. (1990)Fish of the Amazonian Igapo: stability and conservation in a high diversity-low biomass system
Lundberg, J.G., Bornbusch, A.H. and Mago-Leccia, F. (1991)Gladioglanis conquistador n.sp. from Ecuador with diagnoses of the subfamilies Rhamdiinae Bleeker and Pseudopimelodinae n. subf. (Siluriformes: Pimelodidae)
Lundberg, J.G., Bornbusch, A.H. and Mago-Leccia, F. (1991)Gladioglanis conquistador n.sp. from Ecuador with diagnoses of the subfamilies Rhamdiinae Bleeker and Pseudopimelodinae n. subf. (Siluriformes: Pimelodidae)
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Muriel-Cunha, J. (2008)Biodiversidade e sistematica molecular de Phreatobiidae (stariophysi: Siluriformes) - com una proposta sobre sua posicao filogenetica em Siluriformes e uma discussao sobre a evolucao do habito subterraneo
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Muriel-Cunha, J. (2008)Biodiversidade e sistematica molecular de Phreatobiidae (stariophysi: Siluriformes) - com una proposta sobre sua posicao filogenetica em Siluriformes e uma discussao sobre a evolucao do habito subterraneo
Muriel-Cunha, J. (2008)Biodiversidade e sistematica molecular de Phreatobiidae (stariophysi: Siluriformes) - com una proposta sobre sua posicao filogenetica em Siluriformes e uma discussao sobre a evolucao do habito subterraneo
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Trajano, E., Bichuette, M.E. and Kapoor, B.G. (2010)Biology of subterranean fishes
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Sarmiento, J., Bigorne, R., Carvajal-Vallejos, F.M., Maldonado, M., Leciak, E. and Oberdorff, T. (2014)Peces de Bolivia
Bolivian fishes
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Fernandez, L., Bize, J.A. and Lopez, H.L. (2017)Peces subterráneos de Sudamérica
Fernandez, L., Bize, J.A. and Lopez, H.L. (2017)Peces subterráneos de Sudamérica
Fernandez, L., Bize, J.A. and Lopez, H.L. (2017)Peces subterráneos de Sudamérica
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Fernandez, L., Bize, J.A. and Lopez, H.L. (2017)Peces subterráneos de Sudamérica
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Mariluz, B.R. (2019)A base molecular das adaptações visuais nos genes das opsinas de anableps Anableps e Phreatobius cisternarum através da análise de transcriptoma
Mariluz, B.R. (2019)A base molecular das adaptações visuais nos genes das opsinas de anableps Anableps e Phreatobius cisternarum através da análise de transcriptoma
Mariluz, B.R. (2019)A base molecular das adaptações visuais nos genes das opsinas de anableps Anableps e Phreatobius cisternarum através da análise de transcriptoma
Mariluz, B.R. (2019)A base molecular das adaptações visuais nos genes das opsinas de anableps Anableps e Phreatobius cisternarum através da análise de transcriptoma
Mariluz, B.R. (2019)A base molecular das adaptações visuais nos genes das opsinas de anableps Anableps e Phreatobius cisternarum através da análise de transcriptoma
Mariluz, B.R. (2019)A base molecular das adaptações visuais nos genes das opsinas de anableps Anableps e Phreatobius cisternarum através da análise de transcriptoma
Liu, A. Schneider, P. and Taylor,J. (2019)Opsins in the dark. Characterising light sensitive genes in the Brazilian eyeless cavefish Phreatobius cisternarum
Liu, A. Schneider, P. and Taylor,J. (2019)Opsins in the dark. Characterising light sensitive genes in the Brazilian eyeless cavefish Phreatobius cisternarum
Mariluz, B.R. (2019)A base molecular das adaptações visuais nos genes das opsinas de anableps Anableps e Phreatobius cisternarum através da análise de transcriptoma
Liu, A. Schneider, P. and Taylor,J. (2019)Opsins in the dark. Characterising light sensitive genes in the Brazilian eyeless cavefish Phreatobius cisternarum
Liu, A. Schneider, P. and Taylor,J. (2019)Opsins in the dark. Characterising light sensitive genes in the Brazilian eyeless cavefish Phreatobius cisternarum
Liu, A. Schneider, P. and Taylor,J. (2019)Opsins in the dark. Characterising light sensitive genes in the Brazilian eyeless cavefish Phreatobius cisternarum
Perez, L.N., Mariluz, B.R., Lorena, J., Liu, A., Sousa, M.P., Martins, R.A.P., Taylor, J.S. and Schneider, P.N. (2021)The subterranean catfish Phreatobius cisternarum provides insights into visual adaptations to the phreatic environment
Perez, L.N., Mariluz, B.R., Lorena, J., Liu, A., Sousa, M.P., Martins, R.A.P., Taylor, J.S. and Schneider, P.N. (2021)The subterranean catfish Phreatobius cisternarum provides insights into visual adaptations to the phreatic environment
Perez, L.N., Mariluz, B.R., Lorena, J., Liu, A., Sousa, M.P., Martins, R.A.P., Taylor, J.S. and Schneider, P.N. (2021)The subterranean catfish Phreatobius cisternarum provides insights into visual adaptations to the phreatic environment
Perez, L.N., Mariluz, B.R., Lorena, J., Liu, A., Sousa, M.P., Martins, R.A.P., Taylor, J.S. and Schneider, P.N. (2021)The subterranean catfish Phreatobius cisternarum provides insights into visual adaptations to the phreatic environment
Perez, L.N., Mariluz, B.R., Lorena, J., Liu, A., Sousa, M.P., Martins, R.A.P., Taylor, J.S. and Schneider, P.N. (2021)The subterranean catfish Phreatobius cisternarum provides insights into visual adaptations to the phreatic environment
Perez, L.N., Mariluz, B.R., Lorena, J., Liu, A., Sousa, M.P., Martins, R.A.P., Taylor, J.S. and Schneider, P.N. (2021)The subterranean catfish Phreatobius cisternarum provides insights into visual adaptations to the phreatic environment
Perez, L.N., Mariluz, B.R., Lorena, J., Liu, A., Sousa, M.P., Martins, R.A.P., Taylor, J.S. and Schneider, P.N. (2021)The subterranean catfish Phreatobius cisternarum provides insights into visual adaptations to the phreatic environment
Perez, L.N., Mariluz, B.R., Lorena, J., Liu, A., Sousa, M.P., Martins, R.A.P., Taylor, J.S. and Schneider, P.N. (2021)The subterranean catfish Phreatobius cisternarum provides insights into visual adaptations to the phreatic environment
Tagliacollo, V.A., Tan, M., Reis. R.E., Gaia, R., Carrijo, V., Ranuzi, M., Craig, J.M. and Albert, J.S. (2024)Time-calibrated phylogeny of neotropical freshwater fishes
Tagliacollo, V.A., Tan, M., Reis. R.E., Gaia, R., Carrijo, V., Ranuzi, M., Craig, J.M. and Albert, J.S. (2024)Time-calibrated phylogeny of neotropical freshwater fishes
Tagliacollo, V.A., Tan, M., Reis. R.E., Gaia, R., Carrijo, V., Ranuzi, M., Craig, J.M. and Albert, J.S. (2024)Time-calibrated phylogeny of neotropical freshwater fishes
Tagliacollo, V.A., Tan, M., Reis. R.E., Gaia, R., Carrijo, V., Ranuzi, M., Craig, J.M. and Albert, J.S. (2024)Time-calibrated phylogeny of neotropical freshwater fishes
Tagliacollo, V.A., Tan, M., Reis. R.E., Gaia, R., Carrijo, V., Ranuzi, M., Craig, J.M. and Albert, J.S. (2024)Time-calibrated phylogeny of neotropical freshwater fishes
Tagliacollo, V.A., Tan, M., Reis. R.E., Gaia, R., Carrijo, V., Ranuzi, M., Craig, J.M. and Albert, J.S. (2024)Time-calibrated phylogeny of neotropical freshwater fishes
Tagliacollo, V.A., Tan, M., Reis. R.E., Gaia, R., Carrijo, V., Ranuzi, M., Craig, J.M. and Albert, J.S. (2024)Time-calibrated phylogeny of neotropical freshwater fishes
Tagliacollo, V.A., Tan, M., Reis. R.E., Gaia, R., Carrijo, V., Ranuzi, M., Craig, J.M. and Albert, J.S. (2024)Time-calibrated phylogeny of neotropical freshwater fishes