Thesis

Phylogenetics and phylogeography of North Pacific bay gobies: adaptive convergence, relictual endemism, and climate-driven population structure

Ellingson, R.A.

Record Number:
4819
Year:
2012
Pages:
107 pages
Abstract:
North Pacific bay gobies inhabit bays, beaches, and estuaries of temperate Asia and North America, but are absent from the northernmost latitudes of the central Pacific. Morphological characters have conventionally subdivided the clade into two groups – an elongate infaunal Astrabe group, and a deeper-bodied Chasmichthys group – each with a disjunct East-West (amphi-) Pacific distribution. In chapter 1, I use multi-locus DNA sequence data to examine phylogenetic relationships of bay gobies. Basal divergence of the tree coincides with a dramatic global cooling event at the Eocene/Oligocene transition, and there is no evidence of subsequent trans-Pacific migration. These results suggest that several morphological characters previously used to define the Astrabe and Chasmichthys groups have arisen independently on both sides of the Pacific, revealing convergence of ecologically adaptive characters within a geographically divided clade. Chapter 2 uses inferences of vicariance via biogeographic events to time-calibrate this phylogeny. Divergence time estimates allow me to compare and contrast potential mechanisms of bay goby diversification on either side of the Pacific. Speciation in the West Pacific has been driven largely by interstitial colonization of gravel beaches of varying grain size, and by invasion of freshwater streams around the Sea of Japan. In the East Pacific, diversification appears to be related to an intense upwelling regime combined with isolation in large Miocene-era embayments on the coast of California. These results also provide strong evidence for relictual endemism in the Gulf of California, as the divergence of three out of four Gulf-endemic gobies substantially predates tectonic formation of the Gulf itself. In chapter 3, I use one member of the bay goby clade, Gillichthys mirabilis, to investigate population structure within the Gulf and on the adjacent Pacific outer coast. Phylogeography suggests a complex history of extirpation and colonization driven by Pleistocene sea-level fluctuations. A degree of discordance between mitochondrial and nuclear DNA patterns, however, raises the possibility that differential selection may also contribute to genetic subdivision, precluding north-south migration of mitochondrial haplotypes in the face of more extensive nuclear gene flow.
Institution:
University of California, Los Angeles
Times Cited:
6
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New insights into the phylogeography and evolutionary history of two Mediterranean clingfish genera (Teleostei, Gobiesocidae)
Wagner, M. (2018)
New insights into the phylogeography and evolutionary history of two Mediterranean clingfish genera (Teleostei, Gobiesocidae)
Wagner, M. (2018)
New insights into the phylogeography and evolutionary history of two Mediterranean clingfish genera (Teleostei, Gobiesocidae)
Wagner, M. (2018)
New insights into the phylogeography and evolutionary history of two Mediterranean clingfish genera (Teleostei, Gobiesocidae)
Wagner, M. (2018)
New insights into the phylogeography and evolutionary history of two Mediterranean clingfish genera (Teleostei, Gobiesocidae)
Kondo, K. and Kato, M. (2019)
Life in coastal pebble sediment: Unique interstitial organism community and selective feeding on meiobenthos by interstitial fishes (Luciogobius: Gobiidae)
Burton, E.J. and Lea, R.N. (2019)
Annotated checklist of fishes from Monterey Bay National Marine Sanctuary with notes on extralimital species
Kondo, K. and Kato, M. (2019)
Life in coastal pebble sediment: Unique interstitial organism community and selective feeding on meiobenthos by interstitial fishes (Luciogobius: Gobiidae)
Wagner, M., Bračun, S., Skofitsch, G., Kovačić, M., Zogaris, S., Iglésias, S.P., Sefc, K.M. and Koblmüller, S. (2019)
Diversification in gravel beaches: A radiation of interstitial clingfish (Gouania, Gobiesocidae) in the Mediterranean Sea
Mirete-Bachiller, S., Olivieri, D.N., Gambón-Deza, F. (2019)
Gouania willdenowi is a teleost fish without immunoglobulin genes
Ikeda, Y., Tamada, K. and Hirashima, K. (2019)
Luciogobius yubai, a new species of gobioid fish (Teleostei: Gobiidae) from Japan
Mirete-Bachiller, S., Olivieri, D.N., Gambón-Deza, F. (2019)
Gouania willdenowi is a teleost fish without immunoglobulin genes
Mirete-Bachiller, S., Olivieri, D.N., Gambón-Deza, F. (2019)
Gouania willdenowi is a teleost fish without immunoglobulin genes
Ikeda, Y., Tamada, K. and Hirashima, K. (2019)
Luciogobius yubai, a new species of gobioid fish (Teleostei: Gobiidae) from Japan
Mirete-Bachiller, S., Olivieri, D.N., Gambón-Deza, F. (2019)
Gouania willdenowi is a teleost fish without immunoglobulin genes
Mirete-Bachiller, S., Olivieri, D.N., Gambón-Deza, F. (2019)
Gouania willdenowi is a teleost fish without immunoglobulin genes
Ikeda, Y., Tamada, K. and Hirashima, K. (2019)
Luciogobius yubai, a new species of gobioid fish (Teleostei: Gobiidae) from Japan
Ikeda, Y., Tamada, K. and Hirashima, K. (2019)
Luciogobius yubai, a new species of gobioid fish (Teleostei: Gobiidae) from Japan
Ikeda, Y., Tamada, K. and Hirashima, K. (2019)
Luciogobius yubai, a new species of gobioid fish (Teleostei: Gobiidae) from Japan
Shibukawa, K., Aizawa, M., Suzuki, T., Kanagawa N. and Muto, F. (2019)
Preliminary review of earthworm gobies of the genus Luciogobius (Gobiiformes, Oxudercidae) from Shizuoka Prefecture, Japan
Wagner, M., Bračun, S., Skofitsch, G., Kovačić, M., Zogaris, S., Iglésias, S.P., Sefc, K.M. and Koblmüller, S. (2019)
Diversification in gravel beaches: A radiation of interstitial clingfish (Gouania, Gobiesocidae) in the Mediterranean Sea
Wagner, M., Bračun, S., Skofitsch, G., Kovačić, M., Zogaris, S., Iglésias, S.P., Sefc, K.M. and Koblmüller, S. (2019)
Diversification in gravel beaches: A radiation of interstitial clingfish (Gouania, Gobiesocidae) in the Mediterranean Sea
Kondo, K. and Kato, M. (2019)
Life in coastal pebble sediment: Unique interstitial organism community and selective feeding on meiobenthos by interstitial fishes (Luciogobius: Gobiidae)
Wagner, M., Bračun, S., Skofitsch, G., Kovačić, M., Zogaris, S., Iglésias, S.P., Sefc, K.M. and Koblmüller, S. (2019)
Diversification in gravel beaches: A radiation of interstitial clingfish (Gouania, Gobiesocidae) in the Mediterranean Sea
Kondo, K. and Kato, M. (2019)
Life in coastal pebble sediment: Unique interstitial organism community and selective feeding on meiobenthos by interstitial fishes (Luciogobius: Gobiidae)
Poore, G.C.B., Dworschak, P.C.,Robles, R., Mantelatto, F. and Felder, D.L. (2019)
A new classification of Callianassidae and related families (Crustacea: Decapoda: Axiidea) derived from a molecular phylogeny with morphological support
Kondo, K. and Kato, M. (2019)
Life in coastal pebble sediment: Unique interstitial organism community and selective feeding on meiobenthos by interstitial fishes (Luciogobius: Gobiidae)
Wagner, M., Bračun, S., Skofitsch, G., Kovačić, M., Zogaris, S., Iglésias, S.P., Sefc, K.M. and Koblmüller, S. (2019)
Diversification in gravel beaches: A radiation of interstitial clingfish (Gouania, Gobiesocidae) in the Mediterranean Sea
Yun, S.-M., Park, J.-M. and Han, K.-H. (2020)
Osteological development of the larvae and juvenile of Luciogobius grandis (Pisces: Gobiidae)
Yun, S.-M., Park, J.-M. and Han, K.-H. (2020)
Osteological development of the larvae and juvenile of Luciogobius grandis (Pisces: Gobiidae)
Yun, S.-M., Park, J.-M. and Han, K.-H. (2020)
Osteological development of the larvae and juvenile of Luciogobius grandis (Pisces: Gobiidae)
Yun, S.-M., Park, J.-M. and Han, K.-H. (2020)
Osteological development of the larvae and juvenile of Luciogobius grandis (Pisces: Gobiidae)
Yun, S.-M., Park, J.-M. and Han, K.-H. (2020)
Osteological development of the larvae and juvenile of Luciogobius grandis (Pisces: Gobiidae)
Wagner, M., Kovacic, M. and Koblmüller, S. (2021)
Unravelling the taxonomy of an interstitial fish radiation: Three new species of Gouania (Teleostei: Gobiesocidae) from the Mediterranean Sea and redescriptions of G. willdenowi and G. pigra.
Wagner, M., Kovacic, M. and Koblmüller, S. (2021)
Unravelling the taxonomy of an interstitial fish radiation: Three new species of Gouania (Teleostei: Gobiesocidae) from the Mediterranean Sea and redescriptions of G. willdenowi and G. pigra.
Charmpila, E.A., Wagner, M. and Reichenbacher, B. (2021)
First documentation of the otoliths of the species of Gouania (Teleostei: Gobiesocidae) in the Mediterranean Sea.
Charmpila, E.A., Wagner, M. and Reichenbacher, B. (2021)
First documentation of the otoliths of the species of Gouania (Teleostei: Gobiesocidae) in the Mediterranean Sea.
Charmpila, E.A., Wagner, M. and Reichenbacher, B. (2021)
First documentation of the otoliths of the species of Gouania (Teleostei: Gobiesocidae) in the Mediterranean Sea.
Charmpila, E.A., Wagner, M. and Reichenbacher, B. (2021)
First documentation of the otoliths of the species of Gouania (Teleostei: Gobiesocidae) in the Mediterranean Sea.
Charmpila, E.A., Wagner, M. and Reichenbacher, B. (2021)
First documentation of the otoliths of the species of Gouania (Teleostei: Gobiesocidae) in the Mediterranean Sea.
Wagner, M., Kovacic, M. and Koblmüller, S. (2021)
Unravelling the taxonomy of an interstitial fish radiation: Three new species of Gouania (Teleostei: Gobiesocidae) from the Mediterranean Sea and redescriptions of G. willdenowi and G. pigra.
Wagner, M., Kovacic, M. and Koblmüller, S. (2021)
Unravelling the taxonomy of an interstitial fish radiation: Three new species of Gouania (Teleostei: Gobiesocidae) from the Mediterranean Sea and redescriptions of G. willdenowi and G. pigra.
Wagner, M., Kovacic, M. and Koblmüller, S. (2021)
Unravelling the taxonomy of an interstitial fish radiation: Three new species of Gouania (Teleostei: Gobiesocidae) from the Mediterranean Sea and redescriptions of G. willdenowi and G. pigra.