Journal Article
The complete mitochondrial genome of a cavedwelling loach Triplophysa baotianensis (Teleostei:Nemacheilidae)
Wang, Y., Xiao, N., Wang, S., Luo, T., Yang, X., Liu, T. and Zhou, J.
Record Number:
5318
Year:
2021
Journal:
Mitochondrial DNA Part B
Pages:
1209-1211
Volume:
6:3
Notes:
This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work
Abstract:
Triplophysa baotianensis belong to the genus Triplophysa (Teleostei, Nemacheilidae), endemic to
Guizhou Province, Southwestern China. In this study, the complete mitochondrial genome of T. baotianensis
was sequenced and reported for the first time. The circular mitogenome was 16,576 bp in length
and consisted of 13 protein-coding genes, 2 ribosomal RNA (rRNA) genes, 22 transfer RNA (tRNA)
genes, and 1 non-coding control region. The overall base composition was 30.79% A, 27.62% T, 25.46%
C, and 16.13% G with 41.59% GC content. Phylogenetic analysis using mitochondrial genomes of 40
species showed that all Triplophysa species clustered as one monophyletic clade, and T. baotianensis
was the closest to (T. nasobarbatula þ (T. rosaþT. xiangxiensis)).
Times Cited:
3
Relevent Species:
Related Records:
Yang, G., Yuan, F. and Liao, Y. (1986)
A new blind cobitidae fish from the subterranean water in Xiangxi, China
Zhu, S. Q. (1989)The loaches of the subfamily Nemacheilinae in China (Cypriniformes, Cobitidae)
Chen, Y.R., Yang, J.X. and Xu, G.C. (1992)A new blind loach of Triplophysa from Yunnan Stone Forest with comments on its phylogenetic relationship
Yang, J. X. and Chen, Y. R. (1993)The cavefishes from Jiuxiang Limestone Cave of Yunnan, China with reference to character evolutions
Zhou, W. and Cui, G. H. (1993)Status of the scaleless species of Schistura in China, with description of a new species (Teleostei, Balitoridae)
Durand, J., Keller, N., Laumont, C. and Delprat, B. (1996)Sur l'oeil depigmente et degenere d'un nouveau poisson des eaux souterraines de Chine (Triplophysa xiangxiensis)
Chen, X.Y. and Yang, J. (2005)Triplophysa rosa sp. nov.: A new blind loach from China
Wu, He and Li (2005)Linemacheilus wulong
He, L., Wang, X., Chen, Q. and Xiang, J. (2006)Morphological description on Triplophysa xiangxiensis
Wu, Q., He, L.J., Zhen, S.M. and Li, L.G. (2007)White bubble blind fish - Wulong Li rod-shaped loach Heminoemacheilus wulongensis
He, G., He, L., Xu, Y., Zhang. Z and Li, X. (2008)Study on germplasm characters of Triplophysa xiangxiensis.
Wang, J.J., Tang, Q.Y., Wang, Z.J., Zhang, Y.G., Wu, Q. and Peng, Z.G. (2012)The complete mitogenome sequence of a cave loach Triplophysa rosa (Telestei, Balitoridae, Nemacheilinae)
Kottelat, M. (2012)Conspectus cobitidum: An inventory of the loaches of the world (Teleostei: Cypriniformes: Cobitoidei)
Kottelat, M. (2012)Draconectes narinosus, a new genus and species of cave fish from an island of Halong Bay, Vietnam (Teleostei: Nemacheilidae).
Yao, Y. H., Wang, D. Q., He, L. and Yu, L. N. (2012)Isolation and characterization of sixteen microsatellite loci of a blind cavefish, Triplophysa xiangxiensis
Huang, J. (2012)Comparative studies on the gross anatomy and histological structure of the central nervous system between. In: Triplophysa bleekeri and Triplophysa rosa
Zhao, J., Zhao, K. and Peng, Z. (2014)Development and characterization of eleven microsatellite markers for an endangered cavefish (Triplophysa rosa Chen and Yang, 2005) using 454 sequencing
Wang, Y., Shen, Y., Feng, C., Zhao, K., Song, Z., Zhang, Y., Yang, L. and He, S. (2016)Mitogenomic perspectives on the origin of Tibetan loaches and their adaptation to high altitude
Zhang, C.G. and Zhou, Y.H. (2016)Species diversity and distribution of inland fishes in China
Yang,J., Chen,X., Bai,J., Fang,D., Qiu,Y., Jiang,W., Yuan,H., Bian,C., Lu,J., He,S., Pan,X., Zhang,Y., Wang,X., You,X., Wang,Y., Sun,Y., Mao,D., Liu,Y., Fan,G., Zhang,H., Chen,X., Zhang,X., Zheng,L., Wang,J., Cheng,L. (2016)The Sinocyclocheilus cavefish genome provides insights into cave adaptation
Niu, Y., Zhao, Q., Zhao, H., Ludwig, A. and Peng, Z. (2016)Karyotype and genome size of an endangered cavefish (Triplophysa rosa Chen & Yang, 2005)
Wang, Y., Shen, Y., Feng, C., Zhao, K., Song, Z., Zhang, Y., Yang, L. and He, S. (2016)Mitogenomic perspectives on the origin of Tibetan loaches and their adaptation to high altitude
Li, J.X. Wang, Y., Jina H.F.,Li, W.J., Yan, C.C., Yan, P.F., Zhang, X.Y., He, S.P. and Song, Z.B. (2017)Identification of Triplophysa species from the Qinghai-Tibetan Plateau (QTP) and its adjacent regions through DNA barcodes
Li, J.X. Wang, Y., Jina H.F.,Li, W.J., Yan, C.C., Yan, P.F., Zhang, X.Y., He, S.P. and Song, Z.B. (2017)Identification of Triplophysa species from the Qinghai-Tibetan Plateau (QTP) and its adjacent regions through DNA barcodes
Zhang, YH, Wang, Z, Zhang, Z, Wu, MS and Chen, JY (2017)The complete mitochondrial genome of Triplophysa brevibarbata with phylogenetic considerations
Wang, X., Liang,C. and Zhang, E. (2017)The complete mitochondrial genome sequence of Triplophysa xiangxiensis (Teleostei: Nemacheilidae)
Liu, S., Ludwig, A. and Peng, Z. (2017)Nine novel microsatellites for the cavefish (Triplophysa rosa Chen)
Niu, Y. (2017)Comparative histological study of visual organs between Triplophysa rosa and Triplophysa bleekeri
Xiao, Y. (2017)Genetic basis of the albinism in the cavefish Triplophysa rosa
Li, J.X. Wang, Y., Jina H.F.,Li, W.J., Yan, C.C., Yan, P.F., Zhang, X.Y., He, S.P. and Song, Z.B. (2017)Identification of Triplophysa species from the Qinghai-Tibetan Plateau (QTP) and its adjacent regions through DNA barcodes
Zhang, Y., Wang, Z., Zhang, Z., Wu, M.. Chen, J. and Zhao, Y. (2018)The complete mitochondrial genome of Triplophysa brevibarba with phylogenetic consideration
Zhang, Y., Wang, Z., Zhang, Z., Wu, M.. Chen, J. and Zhao, Y. (2018)The complete mitochondrial genome of Triplophysa brevibarba with phylogenetic consideration
Shi, C., Yao, M., Lv, X., Zhao, Q., Peng, Z. and Luo, Y. (2018)Body and organ metabolic rates of a cave fish, Triplophysa rosa: influence of light and ontogenetic variation
Li, C., Liu, T., Li, R, and Li, W. (2018)A New Cave Species of the Genus Triplophysa from Guizhou Province, China
Wu, W.J., He, A.Y., Yang, J.X. and Du, L.N. (2018)Description of a new species of Triplophysa (Teleostei: Nemacheilidae) from Guizhou Province, China
Wu, W.J., He, A.Y., Yang, J.X. and Du, L.N. (2018)Description of a new species of Triplophysa (Teleostei: Nemacheilidae) from Guizhou Province, China
Wu, W.J., He, A.Y., Yang, J.X. and Du, L.N. (2018)Description of a new species of Triplophysa (Teleostei: Nemacheilidae) from Guizhou Province, China
Yang, X., Liu, H., Ma, Z., Zou, Y., Zou, M., Mao, Y., Li, X., Wang, H., Chen, T.,Wang, W. and Yang, R. (2019)Chromosome‐level genome assembly of Triplophysa tibetana, a fish adapted to the harsh high‐altitude environment of the Tibetan Plateau
Huang, T.F., Zhang, P.L., Huang, X.L., Wu, T., Gong, X.Y., Zhang, Y.X., Peng, Q.Z. and Liu, Z.X. (2019)A new cave-dwelling blind loach, Triplophysa erythraea sp. nov. (Cypriniformes: Nemacheilidae), from Hunan Province, China.
Huang, T.F., Zhang, P.L., Huang, X.L., Wu, T., Gong, X.Y., Zhang, Y.X., Peng, Q.Z. and Liu, Z.X. (2019)A new cave-dwelling blind loach, Triplophysa erythraea sp. nov. (Cypriniformes: Nemacheilidae), from Hunan Province, China.
Huang, T.F., Zhang, P.L., Huang, X.L., Wu, T., Gong, X.Y., Zhang, Y.X., Peng, Q.Z. and Liu, Z.X. (2019)A new cave-dwelling blind loach, Triplophysa erythraea sp. nov. (Cypriniformes: Nemacheilidae), from Hunan Province, China.
Sgouros, K., Page, L.M., Orlofske, S.A. and Jadin, R.C. (2019)A revised molecular phylogeny reveals polyphyly in Schistura (Teleostei: Cypriniformes: Nemacheilidae)
Sgouros, K., Page, L.M., Orlofske, S.A. and Jadin, R.C. (2019)A revised molecular phylogeny reveals polyphyly in Schistura (Teleostei: Cypriniformes: Nemacheilidae)
Yang, X., Liu, H., Ma, Z., Zou, Y., Zou, M., Mao, Y., Li, X., Wang, H., Chen, T.,Wang, W. and Yang, R. (2019)Chromosome‐level genome assembly of Triplophysa tibetana, a fish adapted to the harsh high‐altitude environment of the Tibetan Plateau
Yang, X., Liu, H., Ma, Z., Zou, Y., Zou, M., Mao, Y., Li, X., Wang, H., Chen, T.,Wang, W. and Yang, R. (2019)Chromosome‐level genome assembly of Triplophysa tibetana, a fish adapted to the harsh high‐altitude environment of the Tibetan Plateau
Zhao, Q., Zhang, R., Xiao, Y., Niu, Y., Shao, F., Li, Y. and Peng, Z. (2020)Comparative transcriptome profiling of the loaches Triplophysa bleekeri
and Triplophysa rosa reveals potential mechanisms of eye degeneration
Wang, Y., Xiao, N., Wang, S., Luo, T., Yang, X., Liu, T. and Zhou, J. (2021)The complete mitochondrial genome of a cavedwelling loach Triplophysa baotianensis (Teleostei:Nemacheilidae)
Wang, Y., Xiao, N., Wang, S., Luo, T., Yang, X., Liu, T. and Zhou, J. (2021)The complete mitochondrial genome of a cavedwelling loach Triplophysa baotianensis (Teleostei:Nemacheilidae)
Wang, Y., Xiao, N., Wang, S., Luo, T., Yang, X., Liu, T. and Zhou, J. (2021)The complete mitochondrial genome of a cavedwelling loach Triplophysa baotianensis (Teleostei:Nemacheilidae)
Chen, S., Sheraliev, B., Shu, L. and Peng, Z. (2021)Triplophysa wulongensis, a new species of cave-dwelling loach (Teleostei, Nemacheilidae) from Chongqing, Southwest China
Zhao, Q., Shao, F., Li, Y., Yi, S.V. and Peng, Z. (2022)Novel genome sequence of Chinese cavefish (Triplophysa rosa) reveals pervasive relaxation of natural selection in cavefish genomes
Xu, Y., Jing, Y., Zhou, J., Long, R., Meng, J. Yang, Y. and Luo, Y. (2023)Age, growth, and energy storage of the subterranean fish Triplophysa rosa (Cypriniformes: Nemacheilidae) from Chongqing, China
He, Y. and He, D.K. (2023)X-ray microtomography study of cranium, pectoral fin and girdle, and Weberian Apparatus development in juvenile Triplophysa stewarti (Nemacheilidae)
He, Y. and He, D.K. (2023)X-ray microtomography study of cranium, pectoral fin and girdle, and Weberian Apparatus development in juvenile Triplophysa stewarti (Nemacheilidae)
He, Y. and He, D.K. (2023)X-ray microtomography study of cranium, pectoral fin and girdle, and Weberian Apparatus development in juvenile Triplophysa stewarti (Nemacheilidae)
Zhang, J.H., Long, R., Jing, Y.Y., Zhang, P., Xu, Y., Xiong, W., Zhu, Y.Q. and Luo, Y.P. (2023)Loss of behavioral stress response in blind cavefish reduces energy expenditure
Huang, S., Zhao, M., Luo, X., Bedos, A., Wang, Y., Chocat, M., Tian, M. and Liu, W. (2023)Feihu Dong, a new hotspot cave of subterranean biodiversity from China
Xu, Y., Jing, Y., Zhou, J., Long, R., Meng, J. Yang, Y. and Luo, Y. (2023)Age, growth, and energy storage of the cavefish Triplophysa rosa
Wang, Y.D., Dong, X.Y. and Liu, H.B. (2024)The complete mitochondrial genome of Triplophysa erythraea (Huang et al. 2019)(Cypriniformes, Nemacheilidae)
Wang, Y.D., Dong, X.Y. and Liu, H.B. (2024)The complete mitochondrial genome of Triplophysa erythraea (Huang et al. 2019)(Cypriniformes, Nemacheilidae)
Wang, Y.D., Dong, X.Y. and Liu, H.B. (2024)The complete mitochondrial genome of Triplophysa erythraea (Huang et al. 2019)(Cypriniformes, Nemacheilidae)
Ni, L., Jin, L., Zeng, M., Xu, Y., Wang, Y. and Peng, Z. (2024)The cavefish Triplophysa rosa has a well-developed adaptive immune system: Evidence from histological and comparative genomic analysis