Journal Article
Genomewide SNP data reveal cryptic phylogeographic structure and microallopatric divergence in a rapids adapted clade of cichlids from the Congo River
Alter, S.E., Munshi-South, J. and Stiassny, M.L.J.
Record Number:
3761
Year:
2017
Journal:
Molecular Ecology
Pages:
1401-1419
Volume:
26
Abstract:
The lower Congo River is a freshwater biodiversity hot spot in Africa characterized by
some of the world’s largest rapids. However, little is known about the evolutionary
forces shaping this diversity, which include numerous endemic fishes. We investigated
phylogeographic relationships in Teleogramma, a small clade of rheophilic cichlids, in
the context of regional geography and hydrology. Previous studies have been unable
to resolve phylogenetic relationships within Teleogramma due to lack of variation in
nuclear genes and discrete morphological characters among putative species. To sample
more broadly across the genome, we analysed double-digest restriction-associated
sequencing (ddRAD) data from 53 individuals across all described species in the
genus. We also assessed body shape and mitochondrial variation within and between
taxa. Phylogenetic analyses reveal previously unrecognized lineages and instances of
microallopatric divergence across as little as ~1.5 km. Species ranges appear to correspond
to geographic regions broadly separated by major hydrological and topographic
barriers, indicating these features are likely important drivers of diversification.
Mitonuclear discordance indicates one or more introgressive hybridization events, but
no clear evidence of admixture is present in nuclear genomes, suggesting these events
were likely ancient. A survey of female fin patterns hints that previously undetected
lineage-specific patterning may be acting to reinforce species cohesion. These analyses
highlight the importance of hydrological complexity in generating diversity in certain
freshwater systems, as well as the utility of ddRAD-Seq data in understanding diversification processes operating both below and above the species level.
Times Cited:
7
Relevent Species:
Lamprologus lethops Roberts and Stewart 1976Mastacembelus aviceps Roberts and Stewart 1976Mastacembelus brichardi (Poll 1958) Roberts and Stewart 1976Mastacembelus crassus Roberts and Stewart 1976Mastacembelus latens Roberts and Stewart 1976Stomatorhinus microps Boulenger 1898Dolichallabes microphthalmus Poll 1942
Related Records:
Gunther, A. (1873)
New fishes from Angola
Boulenger, G. A. (1898)Matériaux pour la faune du Congo. Poissons nouveaux du Congo. Première Partie. Mormyres
Pappenheim, P. (1911)Zoologische Ergebnisse der Expedition des Herrn G. Tessmann nach Süd-Kamerun und Spanisch-Guinea. Fische
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Poll, M. (1942)Description d'un genre nouveau de Clariidae originaire du Congo belge
Poll, M. (1942)Notes sue l'osteologie de Dolichallabes microphalmus Poll et remarques sur l'evolution des Clariidae
Poll, M. (1942)Description d'un genre nouveau de Clariidae originaire du Congo belge
Poll, M. (1944)Description préliminaire d'un Clariidae nouveau observé à Léopoldville par M. L. Tihon
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Poll, M. (1958)Description d'un poisson aveugle nouveau du Congo belge, appartenant à la famille des Mastacembelidae
Poll, M. (1958)Description d'un poisson aveugle nouveau du Congo belge, appartenant à la famille des Mastacembelidae
Poll, M. (1958)Description d'un poisson aveugle nouveau du Congo belge, appartenant à la famille des Mastacembelidae
Poll, M. (1958)Description d'un poisson aveugle nouveau du Congo belge, appartenant à la famille des Mastacembelidae
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Schobert, C.S., Stiassny, M.L.J., Jeffery, W.D. and Dubielzig, R.R. (2011)Comparative ocular anatomy In troglomorphic fish: Sensory compensation for reduced vision
Schobert, C.S., Stiassny, M.L.J., Jeffery, W.D. and Dubielzig, R.R. (2011)Comparative ocular anatomy In troglomorphic fish: Sensory compensation for reduced vision
Schobert, C.S., Stiassny, M.L.J., Jeffery, W.D. and Dubielzig, R.R. (2011)Comparative ocular anatomy In troglomorphic fish: Sensory compensation for reduced vision
Schobert, C.S., Stiassny, M.L.J., Jeffery, W.D. and Dubielzig, R.R. (2011)Comparative ocular anatomy In troglomorphic fish: Sensory compensation for reduced vision
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Schobert, C.S., Stiassny, M.L.J., Schwab, I.R., Zeiss, C., Schelly, R.C. and Dubielzig, R.R. (2013)Comparative occular anatomy in a blind African cichlid fish, Lamprologus lethops
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Alter, S.E., Brown, B. and Stiassny, M.L.J. (2015)Molecular phylogenetics reveals convergent evolution in lower Congo River spiny eels
Stiassny, M.L.J. and Alter, S.E. (2015)Phylogenetics of Teleogramma, a riverine clade of African cichlid fishes, with a description of the deep-water molluskivore —Teleogramma obama — from the lower reaches of the middle Congo River.
Stiassny, M.L.J. and Alter, S.E. (2015)Phylogenetics of Teleogramma, a riverine clade of African cichlid fishes, with a description of the deep-water molluskivore —Teleogramma obama — from the lower reaches of the middle Congo River.
Stiassny, M.L.J. and Alter, S.E. (2015)Phylogenetics of Teleogramma, a riverine clade of African cichlid fishes, with a description of the deep-water molluskivore —Teleogramma obama — from the lower reaches of the middle Congo River.
Alter, S.E., Brown, B. and Stiassny, M.L.J. (2015)Molecular phylogenetics reveals convergent evolution in lower Congo River spiny eels
Stiassny, M.L.J. and Alter, S.E. (2015)Phylogenetics of Teleogramma, a riverine clade of African cichlid fishes, with a description of the deep-water molluskivore —Teleogramma obama — from the lower reaches of the middle Congo River.
Stiassny, M.L.J. and Alter, S.E. (2015)Phylogenetics of Teleogramma, a riverine clade of African cichlid fishes, with a description of the deep-water molluskivore —Teleogramma obama — from the lower reaches of the middle Congo River.
Stiassny, M.L.J. and Alter, S.E. (2015)Phylogenetics of Teleogramma, a riverine clade of African cichlid fishes, with a description of the deep-water molluskivore —Teleogramma obama — from the lower reaches of the middle Congo River.
Alter, S.E., Brown, B. and Stiassny, M.L.J. (2015)Molecular phylogenetics reveals convergent evolution in lower Congo River spiny eels
Stiassny, M.L.J. and Alter, S.E. (2015)Phylogenetics of Teleogramma, a riverine clade of African cichlid fishes, with a description of the deep-water molluskivore —Teleogramma obama — from the lower reaches of the middle Congo River.
Alter, S.E., Brown, B. and Stiassny, M.L.J. (2015)Molecular phylogenetics reveals convergent evolution in lower Congo River spiny eels
Alter, S.E., Brown, B. and Stiassny, M.L.J. (2015)Molecular phylogenetics reveals convergent evolution in lower Congo River spiny eels
Alter, S.E., Brown, B. and Stiassny, M.L.J. (2015)Molecular phylogenetics reveals convergent evolution in lower Congo River spiny eels
Ozouf-Costaz, C., Coutanceau, J.P., Bonillo, C., Belkadi, L., Fermon, Y., Agnese, J.F., Guidi-Rontani, C. and Paugy, D. (2015)First insights into karyotype evolution within the family Mormyridae
Lujan, N.K. and Conway, K.W. (2015)Life in the fast lane: A review of rheophily in freshwater fishes
Alter, S.E., Brown, B. and Stiassny, M.L.J. (2015)Molecular phylogenetics reveals convergent evolution in lower Congo River spiny eels
Harrison, I.J., Brummett, R. and Stiassny, M.L.J. (2016)Congo River basin
Harrison, I.J., Brummett, R. and Stiassny, M.L.J. (2016)Congo River basin
Alter, S.E., Munshi-South, J. and Stiassny, M.L.J. (2017)Genomewide SNP data reveal cryptic phylogeographic structure and microallopatric divergence in a rapids adapted clade of cichlids from the Congo River
Day, J.J., Fages, A., Brown, K.J., Vreven, E.J., Stiassny, M.L.J., Bills, R., Friel, J.P. and Ruber, L. (2017)Multiple independent colonizations into the Congo Basin during the continental radiation of African Mastacembelus spiny eels
Alter, S.E., Munshi-South, J. and Stiassny, M.L.J. (2017)Genomewide SNP data reveal cryptic phylogeographic structure and microallopatric divergence in a rapids adapted clade of cichlids from the Congo River
Day, J.J., Fages, A., Brown, K.J., Vreven, E.J., Stiassny, M.L.J., Bills, R., Friel, J.P. and Ruber, L. (2017)Multiple independent colonizations into the Congo Basin during the continental radiation of African Mastacembelus spiny eels
Day, J.J., Fages, A., Brown, K.J., Vreven, E.J., Stiassny, M.L.J., Bills, R., Friel, J.P. and Ruber, L. (2017)Multiple independent colonizations into the Congo Basin during the continental radiation of African Mastacembelus spiny eels
Alter, S.E., Munshi-South, J. and Stiassny, M.L.J. (2017)Genomewide SNP data reveal cryptic phylogeographic structure and microallopatric divergence in a rapids adapted clade of cichlids from the Congo River
Day, J.J., Fages, A., Brown, K.J., Vreven, E.J., Stiassny, M.L.J., Bills, R., Friel, J.P. and Ruber, L. (2017)Multiple independent colonizations into the Congo Basin during the continental radiation of African Mastacembelus spiny eels
Alter, S.E., Munshi-South, J. and Stiassny, M.L.J. (2017)Genomewide SNP data reveal cryptic phylogeographic structure and microallopatric divergence in a rapids adapted clade of cichlids from the Congo River
Day, J.J., Fages, A., Brown, K.J., Vreven, E.J., Stiassny, M.L.J., Bills, R., Friel, J.P. and Ruber, L. (2017)Multiple independent colonizations into the Congo Basin during the continental radiation of African Mastacembelus spiny eels
Alter, S.E., Munshi-South, J. and Stiassny, M.L.J. (2017)Genomewide SNP data reveal cryptic phylogeographic structure and microallopatric divergence in a rapids adapted clade of cichlids from the Congo River
Day, J.J., Fages, A., Brown, K.J., Vreven, E.J., Stiassny, M.L.J., Bills, R., Friel, J.P. and Ruber, L. (2017)Multiple independent colonizations into the Congo Basin during the continental radiation of African Mastacembelus spiny eels
Alter, S.E., Munshi-South, J. and Stiassny, M.L.J. (2017)Genomewide SNP data reveal cryptic phylogeographic structure and microallopatric divergence in a rapids adapted clade of cichlids from the Congo River
Mahamba Byanikiro, R., Kankonda Busanga, A., Ndjaki Nsila, J. and Micha, J.-C. (2017)Régime alimentaire et biologie de la reproduction de Stomatorhinus corneti Boulanger, 1899 (Pisces, Mormyridae)
Alter, S.E., Munshi-South, J. and Stiassny, M.L.J. (2017)Genomewide SNP data reveal cryptic phylogeographic structure and microallopatric divergence in a rapids adapted clade of cichlids from the Congo River
Stiassny, M.L.J., Monsembula Iyaba, R.J.C., Liyandja, T., Mbimbi Mayi Munene, J.J., Yoko, M., and Alter, E. (2018)The evolution of extreme phenotypic convergence across fish lineages in the hyper-diverse Lower Congo River
Stiassny, M.L.J., Monsembula Iyaba, R.J.C., Liyandja, T., Mbimbi Mayi Munene, J.J., Yoko, M., and Alter, E. (2018)The evolution of extreme phenotypic convergence across fish lineages in the hyper-diverse Lower Congo River
Schedel, F.D.B., Musilová, Z. and Schliewen, U.K. (2018)New divergence ages provide novel insights into the biogeographic rigin of the East African Cichlid Radiation (EAR)
Schedel, F.D.B., Musilová, Z. and Schliewen, U.K. (2018)New divergence ages provide novel insights into the biogeographic rigin of the East African Cichlid Radiation (EAR)
Stiassny, M.L.J., Monsembula Iyaba, R.J.C., Liyandja, T., Mbimbi Mayi Munene, J.J., Yoko, M., and Alter, E. (2018)The evolution of extreme phenotypic convergence across fish lineages in the hyper-diverse Lower Congo River
Stiassny, M.L.J., Monsembula Iyaba, R.J.C., Liyandja, T., Mbimbi Mayi Munene, J.J., Yoko, M., and Alter, E. (2018)The evolution of extreme phenotypic convergence across fish lineages in the hyper-diverse Lower Congo River
Stiassny, M.L.J., Monsembula Iyaba, R.J.C., Liyandja, T., Mbimbi Mayi Munene, J.J., Yoko, M., and Alter, E. (2018)The evolution of extreme phenotypic convergence across fish lineages in the hyper-diverse Lower Congo River
Stiassny, M.L.J., Monsembula Iyaba, R.J.C., Liyandja, T., Mbimbi Mayi Munene, J.J., Yoko, M., and Alter, E. (2018)The evolution of extreme phenotypic convergence across fish lineages in the hyper-diverse Lower Congo River
Stiassny, M.L.J., Monsembula Iyaba, R.J.C., Liyandja, T., Mbimbi Mayi Munene, J.J., Yoko, M., and Alter, E. (2018)The evolution of extreme phenotypic convergence across fish lineages in the hyper-diverse Lower Congo River
Stiassny, M.L.J. (2019)Fishes in the lower Congo River An extreme case of species divergence and convergent evolution
Stiassny, M.L.J. (2019)Fishes in the lower Congo River An extreme case of species divergence and convergent evolution
Schedel, F.D.B., Musilova, Z. and Schliewen, U.K. (2019)East African cichlid lineages (Teleostei: Cichlidae) might be older than their ancient host lakes: new divergence estimates for the east African cichlid radiation
Schedel, F.D.B., Musilova, Z. and Schliewen, U.K. (2019)East African cichlid lineages (Teleostei: Cichlidae) might be older than their ancient host lakes: new divergence estimates for the east African cichlid radiation
Stiassny, M.L.J. (2019)Fishes in the lower Congo River An extreme case of species divergence and convergent evolution
Sonet, G., Snoeks, J., Nagy, Z.T., Vreven, E., Boden, G., Breman, F.C., Decru, E., Hanssens, M., Zamba, A.I., Jordaens, K., Mamonekene, V., Musschoot, T., Van Houdt, J., Van Steen, M. (2019)DNA barcoding fishes from the Congo and the Lower Guinean provinces: Assembling a reference library for poorly inventoried fauna
Stiassny, M.L.J. (2019)Fishes in the lower Congo River An extreme case of species divergence and convergent evolution
Stiassny, M.L.J. (2019)Fishes in the lower Congo River An extreme case of species divergence and convergent evolution
Stiassny, M.L.J. (2019)Fishes in the lower Congo River An extreme case of species divergence and convergent evolution
Stiassny, M.L.J. (2019)Fishes in the lower Congo River An extreme case of species divergence and convergent evolution
Elbein, A. (2020)Earth’s deepest river conceals an evolutionary mystery
Aardema, M.L., Stiassny, M.L.J. and Alter, S.E. (2020)Genomic analysis of the only blind Cichlid reveals extensive inactivation in eye and pigment formation genes
Aardema, M.L., Stiassny, M.L.J. and Alter, S.E. (2020)Genomic analysis of the only blind Cichlid reveals extensive inactivation in eye and pigment formation genes
Elbein, A. (2020)Earth’s deepest river conceals an evolutionary mystery
Aardema, M.L., Stiassny, M.L.J. and Alter, S.E. (2020)Genomic analysis of the only blind Cichlid reveals extensive inactivation in eye and pigment formation genes
Elbein, A. (2020)Earth’s deepest river conceals an evolutionary mystery
Elbein, A. (2020)Earth’s deepest river conceals an evolutionary mystery
Elbein, A. (2020)Earth’s deepest river conceals an evolutionary mystery
Elbein, A. (2020)Earth’s deepest river conceals an evolutionary mystery
Elbein, A. (2020)Earth’s deepest river conceals an evolutionary mystery
Stiassny, M.L. and Alter, S.E. (2021)Life in the fast lane: diversity, ecology, and speciation of cichlids in the lower Congo River
Stiassny, M.L. and Alter, S.E. (2021)Life in the fast lane: diversity, ecology, and speciation of cichlids in the lower Congo River
Stiassny, M.L. and Alter, S.E. (2021)Life in the fast lane: diversity, ecology, and speciation of cichlids in the lower Congo River
Kurata, N.P., Hickerson, M.J., Hoffberg, S.L., Gardiner, N., Stiassny, M.L.J. and Alter, S.E. (2022)Riverscape genomics of cichlid fishes in the lower Congo: Uncovering mechanisms of diversification in an extreme hydrological regime
Kurata, N.P., Hickerson, M.J., Hoffberg, S.L., Gardiner, N., Stiassny, M.L.J. and Alter, S.E. (2022)Riverscape genomics of cichlid fishes in the lower Congo: Uncovering mechanisms of diversification in an extreme hydrological regime
Kurata, N.P. (2023)Illuminating the drivers of genomic diversification in lamprologine cichlids of the lower Congo River
Wang, J., Tai, J., Zhang, W., He, K., Lan, H. and Liu, H. (2023)Comparison of seven complete mitochondrial genomes from Lamprologus and Neolamprologus (Chordata, Teleostei, Perciformes) and the phylogenetic implications for Cichlidae