Journal Article

Phylogenomic analysis on the exceptionally diverse fish clade Gobioidei (Actinopterygii: Gobiiformes) and data-filtering based on molecular clocklikeness

Kuang, T., Tornabene, L., Lia, J., Jiang, J., Chakrabarty, P., Sparks, J.S., Naylor, G.J.P. and Lia, C.

Record Number:
4255
Year:
2018
Journal:
Molecular Phylogenetics and Evolution
Pages:
192-202
Volume:
128
Abstract:
The use of genome-scale data to infer phylogenetic relationships has gained in popularity in recent years due to the progress made in target-gene capture and sequencing techniques. Data filtering, the approach of excluding data inconsistent with the model from analyses, presumably could alleviate problems caused by systematic errors in phylogenetic inference. Different data filtering criteria, such as those based on evolutionary rate and molecular clocklikeness as well as others have been proposed for selecting useful phylogenetic markers, yet few studies have tested these criteria using phylogenomic data. We developed a novel set of single-copy nuclear coding markers to capture thousands of target genes in gobioid fishes, a species-rich lineages of vertebrates, and tested the effects of data-filtering methods based on substitution rate and molecular clocklikeness while attempting to control for the compounding effects of missing data and variation in locus length. We found that molecular clocklikeness was a better predictor than overall substitution rate for phylogenetic usefulness of molecular markers in our study. In addition, when the 100 best ranked loci for our predictors were concatenated and analyzed using maximum likelihood, or combined in a coalescent-based species-tree analysis, the resulting trees showed a well-resolved topology of Gobioidei that mostly agrees with previous studies. However, trees generated from the 100 least clocklike frequently recovered conflicting, and in some cases clearly erroneous topologies with strong support, thus indicating strong systematic biases in those datasets. Collectively these results suggest that data filtering has the potential improve the performance of phylogenetic inference when using both a concatenation approach as well as methods that rely on input from individual gene trees (i.e. coalescent species-tree approaches), which may be preferred in scenarios where incomplete lineage sorting is likely to be an issue.
Times Cited:
29
Relevent Species:
Oxyeleotris colasi Pouyaud, Kadarusman and Hadiaty 2013Oxyeleotris caeca Allen 1996Caecieleotris morrisi Walsh and Chakrabarty 2016Caecogobius cryptophthalmus Berti and Ercolini 1991Caecogobius personatus Larson and Husana 2018Eleotris undescribed species [Myers and Donaldson 2003]Glossogobius ankaranensis Banister 1994Glossogobius undescribed species [Sparks and Chakrabarty 2012]Milyeringa justitia Larson and Foster in Larson, Foster Humphreys and Stevens 2013Typhleotris madagascariensis Petit 1933Typhleotris pauliani Arnoult 1959Typhleotris mararybe Sparks and Chakrabarty 2012Luciogobius fluvialis Kanagawa, Itai and Senou 2011Luciogobius elongatus B [Yamada, Sugiyama, Tamaki, Kawakita and Kato 2009]Luciogobius dormitoris Shiogaki and Dotsu 1976Luciogobius elongatus Regan 1905Luciogobius elongatus C [Yamada, Sugiyama, Tamaki, Kawakita and Kato 2009]Luciogobius elongatus D [Yamada, Sugiyama, Tamaki, Kawakita and Kato 2009]Luciogobius elongatus E [Yamada, Sugiyama, Tamaki, Kawakita and Kato 2009]Luciogobius elongatus F [Yamada, Sugiyama, Tamaki, Kawakita and Kato 2009]Luciogobius grandis Arai 1970Luciogobius grandis B [Yamada, Sugiyama, Tamaki, Kawakita and Kato 2009]Luciogobius parvulus (Snyder 1909)Luciogobius parvulus B [Yamada, Sugiyama, Tamaki, Kawakita and Kato 2009]Luciogobius platycephalus Shiogaki and Dotsu 1976Luciogobius platycephalus B [Yamada, Sugiyama, Tamaki, Kawakita and Kato 2009]Luciogobius undescribed species [Yamada, Sugiyama, Tamaki, Kawakita and Kato 2009]Luciogobius pallidus Regan 1940Luciogobius albus Regan 1940
Related Records:
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Un poisson cavernicole aveugle des eaux douces de Madagascar:Typhleotris madagascariensis gen. et. sp. nov
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The fishes of the Gobiid genus Luciogobius Gill
Regan, C. T. (1940)
The fishes of the Gobiid genus Luciogobius Gill
Petit, G. (1941)
Sur la morphologie cranienne de deux Poissons cavernicoles aveugle
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Angel, F. (1949)
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A new species of a goby with a synopsis of the species of the genus Luciogobius Gill and its two allied genera
Dotu, Y (1957)
A new species of a goby with a synopsis of the species of the genus Luciogobius Gill and its two allied genera
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Une nouvelle espece de poisson aveugle de Madagascar: Typhleotris pauliani n. sp
Arnoult, J. (1959)
Poissons des eaux douces. Faune de Madagascar
Arnoult, J. (1959)
Une nouvelle espece de poisson aveugle de Madagascar: Typhleotris pauliani n. sp
Arnoult, J. (1959)
Poissons des eaux douces. Faune de Madagascar
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Dotu, Y (1963)
On the blind gobioid fish Luciogobius albus Regan
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On the blind gobioid fish Luciogobius albus Regan
Kiener, A. (1963)
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Brief notes on Luciogobius albus
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Brief notes on Luciogobius albus
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Luciogobius albus
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Murai, Y (1969)
A study on Luciogobius albus
Murai, Y (1969)
Luciogobius albus
Murai, Y (1969)
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Murai, Y (1969)
A study on Luciogobius albus
Murai, Y (1969)
Luciogobius albus
Murai, Y (1970)
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Arai, R (1970)
Luciogobius grandis, a new goby from Japan and Korea
Arai, R (1970)
Luciogobius grandis, a new goby from Japan and Korea
Murai, Y (1970)
A study on Luciogobius albus Regan (2)
Murai, Y (1970)
A study on Luciogobius albus Regan (2)
Arai, R (1970)
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Yamamuro, K (1972)
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Kiener, A. (1972)
Poissons Malagasy menaces de disparition: ecologie, biologie, et protection de ces especes
Dotu, Y (1972)
Rare freshwater fishes (18). Luciogobius pallidus
Dotu, Y (1972)
Rare freshwater fishes (18). Luciogobius pallidus
Katayama, M and Ikeda, H (1972)
Luciogobius pallidus collected at Nagato-shi in Yamaguchi Prefecture
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Luciogobius pallidus collected at Nagato-shi in Yamaguchi Prefecture
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Luciogobius albus found in a lava tunnel of Tomie-cho, the Goto Islands
Murai, Y (1972)
Luciogobius albus found in a lava tunnel of Tomie-cho, the Goto Islands
Yamamuro, K (1972)
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Yamamuro, K (1972)
On the food habit, sexual characters and spawning time of Luciogobius albus Regan
Kiener, A. (1972)
Poissons Malagasy menaces de disparition: ecologie, biologie, et protection de ces especes
Dotu, Y (1972)
Rare freshwater fishes (18). Luciogobius pallidus
Katayama, M and Ikeda, H (1972)
Luciogobius pallidus collected at Nagato-shi in Yamaguchi Prefecture
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Luciogobius albus found in a lava tunnel of Tomie-cho, the Goto Islands
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Record of a gobiid fish, Luciogobius pallidus Regan from Owase City, Mie Prefecture, Japan
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Freshwater ecoregions of Africa and Madagascar. A conservation assessment
Thieme, M.L., Abell, R., Stiassny, M.L.J.,Skelton, P., Lehner, B., Teugels, G., Dinerstein, E., Kamdem-Toham, A., Burgess, B., and Olson, D. (2005)
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Thieme, M.L., Abell, R., Stiassny, M.L.J.,Skelton, P., Lehner, B., Teugels, G., Dinerstein, E., Kamdem-Toham, A., Burgess, B., and Olson, D. (2005)
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Freshwater ecoregions of Africa and Madagascar. A conservation assessment
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A record of rare freshwater fishes including Luciogobius pallidus collected from the Usuki River, Oita Prefecture, Japan
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Ecoregion 67. Madagascar northwestern basins
Sparks, J. (2005)
Ecoregion 68. Madagascar western basins
Sparks, J. (2005)
Ecoregion 68. Madagascar western basins
Sparks, J. (2005)
Ecoregion 87. Madagascar southern basins
Sparks, J. (2005)
Ecoregion 87. Madagascar southern basins
Sparks, J. (2005)
Ecoregion 68. Madagascar western basins
Wilmé, L., Goodman, S.M. & Ganzhorn, J.U. (2006)
Biogeographic evolution of Madagascar's microendemic biota
Wilmé, L., Goodman, S.M. & Ganzhorn, J.U. (2006)
Biogeographic evolution of Madagascar's microendemic biota
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Humphreys, W.F., Shiao, J.-C., Iizuka, Y. and Tzeng, W.-N. (2006)
Can otolith microchemistry reveal whether the blind cave gudgeon, Milyeringa veritas (Eleotridae), is diadromous within a subterranean estuary?
Maeda, K., Yamasaki, N., Kondo, M. and Tachihara, K. (2008)
Occurrence and morphology of larvae and juveniles of six Luciogobius species from Aritsu Beach, Okinawa Island
Maeda, K., Yamasaki, N., Kondo, M. and Tachihara, K. (2008)
Occurrence and morphology of larvae and juveniles of six Luciogobius species from Aritsu Beach, Okinawa Island
Hirashima, K and Takahashi, H (2008)
Early life history of aquarium-held blind well goby Luciogobius pallidus, collected from Wakayama Prefecture, Japan
Maeda, K., Yamasaki, N., Kondo, M. and Tachihara, K. (2008)
Occurrence and morphology of larvae and juveniles of six Luciogobius species from Aritsu Beach, Okinawa Island
Maeda, K., Yamasaki, N., Kondo, M. and Tachihara, K. (2008)
Occurrence and morphology of larvae and juveniles of six Luciogobius species from Aritsu Beach, Okinawa Island
Maeda, K., Yamasaki, N., Kondo, M. and Tachihara, K. (2008)
Occurrence and morphology of larvae and juveniles of six Luciogobius species from Aritsu Beach, Okinawa Island
Maeda, K., Yamasaki, N., Kondo, M. and Tachihara, K. (2008)
Occurrence and morphology of larvae and juveniles of six Luciogobius species from Aritsu Beach, Okinawa Island
Maeda, K., Yamasaki, N., Kondo, M. and Tachihara, K. (2008)
Occurrence and morphology of larvae and juveniles of six Luciogobius species from Aritsu Beach, Okinawa Island
Maeda, K., Yamasaki, N., Kondo, M. and Tachihara, K. (2008)
Occurrence and morphology of larvae and juveniles of six Luciogobius species from Aritsu Beach, Okinawa Island
Hirashima, K and Takahashi, H (2008)
Early life history of aquarium-held blind well goby Luciogobius pallidus, collected from Wakayama Prefecture, Japan
Maeda, K., Yamasaki, N., Kondo, M. and Tachihara, K. (2008)
Occurrence and morphology of larvae and juveniles of six Luciogobius species from Aritsu Beach, Okinawa Island
Maeda, K., Yamasaki, N., Kondo, M. and Tachihara, K. (2008)
Occurrence and morphology of larvae and juveniles of six Luciogobius species from Aritsu Beach, Okinawa Island
Maeda, K., Yamasaki, N., Kondo, M. and Tachihara, K. (2008)
Occurrence and morphology of larvae and juveniles of six Luciogobius species from Aritsu Beach, Okinawa Island
Maeda, K., Yamasaki, N., Kondo, M. and Tachihara, K. (2008)
Occurrence and morphology of larvae and juveniles of six Luciogobius species from Aritsu Beach, Okinawa Island
Maeda, K., Yamasaki, N., Kondo, M. and Tachihara, K. (2008)
Occurrence and morphology of larvae and juveniles of six Luciogobius species from Aritsu Beach, Okinawa Island
Maeda, K., Yamasaki, N., Kondo, M. and Tachihara, K. (2008)
Occurrence and morphology of larvae and juveniles of six Luciogobius species from Aritsu Beach, Okinawa Island
Hirashima, K and Takahashi, H (2008)
Early life history of aquarium-held blind well goby Luciogobius pallidus, collected from Wakayama Prefecture, Japan
Maeda, K., Yamasaki, N., Kondo, M. and Tachihara, K. (2008)
Occurrence and morphology of larvae and juveniles of six Luciogobius species from Aritsu Beach, Okinawa Island
Maeda, K., Yamasaki, N., Kondo, M. and Tachihara, K. (2008)
Occurrence and morphology of larvae and juveniles of six Luciogobius species from Aritsu Beach, Okinawa Island
Maeda, K., Yamasaki, N., Kondo, M. and Tachihara, K. (2008)
Occurrence and morphology of larvae and juveniles of six Luciogobius species from Aritsu Beach, Okinawa Island
Kanagawa, N. and Itai, T. (2009)
Record of a gobiid fish Luciogobius sp. (Perciformes: Gobiidae) from the Abe River System in Shizuoka Prefecture, Central Japan
Yamada, T., Sugiyama, K, Tamaki, K, Kawakita, A. and Kato, M. (2009)
Adaptive radiation of gobies in the interstitial habitats of gravel beaches accompanied by body elongation and excessive vertebral segmentation
Yamada, T., Sugiyama, K, Tamaki, K, Kawakita, A. and Kato, M. (2009)
Adaptive radiation of gobies in the interstitial habitats of gravel beaches accompanied by body elongation and excessive vertebral segmentation
Yamada, T., Sugiyama, K, Tamaki, K, Kawakita, A. and Kato, M. (2009)
Adaptive radiation of gobies in the interstitial habitats of gravel beaches accompanied by body elongation and excessive vertebral segmentation
Yamada, T., Sugiyama, K, Tamaki, K, Kawakita, A. and Kato, M. (2009)
Adaptive radiation of gobies in the interstitial habitats of gravel beaches accompanied by body elongation and excessive vertebral segmentation
Yamada, T., Sugiyama, K, Tamaki, K, Kawakita, A. and Kato, M. (2009)
Adaptive radiation of gobies in the interstitial habitats of gravel beaches accompanied by body elongation and excessive vertebral segmentation
Yamada, T., Sugiyama, K, Tamaki, K, Kawakita, A. and Kato, M. (2009)
Adaptive radiation of gobies in the interstitial habitats of gravel beaches accompanied by body elongation and excessive vertebral segmentation
Yamada, T., Sugiyama, K, Tamaki, K, Kawakita, A. and Kato, M. (2009)
Adaptive radiation of gobies in the interstitial habitats of gravel beaches accompanied by body elongation and excessive vertebral segmentation
Yamada, T., Sugiyama, K, Tamaki, K, Kawakita, A. and Kato, M. (2009)
Adaptive radiation of gobies in the interstitial habitats of gravel beaches accompanied by body elongation and excessive vertebral segmentation
Yamada, T., Sugiyama, K, Tamaki, K, Kawakita, A. and Kato, M. (2009)
Adaptive radiation of gobies in the interstitial habitats of gravel beaches accompanied by body elongation and excessive vertebral segmentation
Yamada, T., Sugiyama, K, Tamaki, K, Kawakita, A. and Kato, M. (2009)
Adaptive radiation of gobies in the interstitial habitats of gravel beaches accompanied by body elongation and excessive vertebral segmentation
Yamada, T., Sugiyama, K, Tamaki, K, Kawakita, A. and Kato, M. (2009)
Adaptive radiation of gobies in the interstitial habitats of gravel beaches accompanied by body elongation and excessive vertebral segmentation
Yamada, T., Sugiyama, K, Tamaki, K, Kawakita, A. and Kato, M. (2009)
Adaptive radiation of gobies in the interstitial habitats of gravel beaches accompanied by body elongation and excessive vertebral segmentation
Yamada, T., Sugiyama, K, Tamaki, K, Kawakita, A. and Kato, M. (2009)
Adaptive radiation of gobies in the interstitial habitats of gravel beaches accompanied by body elongation and excessive vertebral segmentation
Yamada, T., Sugiyama, K, Tamaki, K, Kawakita, A. and Kato, M. (2009)
Adaptive radiation of gobies in the interstitial habitats of gravel beaches accompanied by body elongation and excessive vertebral segmentation
Yamada, T., Sugiyama, K, Tamaki, K, Kawakita, A. and Kato, M. (2009)
Adaptive radiation of gobies in the interstitial habitats of gravel beaches accompanied by body elongation and excessive vertebral segmentation
Department of the Environment, Water, Heritage and the Arts (2010)
Ningaloo Coast World Heritage nomination
Chakrabarty, P. (2010)
Status and phylogeny of Milyerigidae (Teleostei:Gobiiformes), with the description of a new blind cave-fish from Australia, Milyeringa brooksi, n. sp.
Chakrabarty, P. (2010)
Status and phylogeny of Milyerigidae (Teleostei:Gobiiformes), with the description of a new blind cave-fish from Australia, Milyeringa brooksi, n. sp.
Chakrabarty, P. (2010)
Status and phylogeny of Milyerigidae (Teleostei:Gobiiformes), with the description of a new blind cave-fish from Australia, Milyeringa brooksi, n. sp.
Collins, L.B. and Stevens, A. (2010)
Assessment of coastal groundwater and linkages with Ningaloo Reef – final report February 2010
Kanagawa, N, Itai, T and Senou, H (2011)
Two new species of freshwater gobies of the genus Luciogobius (Perciformes: Gobiidae) from Japan
Kanagawa, N, Itai, T and Senou, H (2011)
Two new species of freshwater gobies of the genus Luciogobius (Perciformes: Gobiidae) from Japan
Kanagawa, N, Itai, T and Senou, H (2011)
Two new species of freshwater gobies of the genus Luciogobius (Perciformes: Gobiidae) from Japan
Kim, B.J (2012)
New record of a rare hypogean gobiid, Luciogobius pallidus from jeju Island, Korea
Sparks, J.S. and Chakrabarty, P. (2012)
Revision of the endemic Malagasy cavefish genus Typhleotris (Teleostei: Gobiiformes: Milyeringidae) with discussion of its phylogenetic placement and description of a new species
Kim, B.J (2012)
New record of a rare hypogean gobiid, Luciogobius pallidus from jeju Island, Korea
Chakrabarty, P., Davis, M.P. and Sparks, J.S. (2012)
The first record of a trans-oceanic sister-group relationship between obligate vertebrate troglobites
Sparks, J.S. and Chakrabarty, P. (2012)
Revision of the endemic Malagasy cavefish genus Typhleotris (Teleostei: Gobiiformes: Milyeringidae) with discussion of its phylogenetic placement and description of a new species
Humphreys, W.F (2012)
Diversity patterns in Australia
Pouyaud, L., Kadarusman, Hadiaty, R. K., Slembrouck, J., Lemauk, N., Kusumah, R. V. and Keith, P. (2012)
Oxyeleotris colasi (Teleostei: Eleotridae), a new blind cave fish from Lengguru in West Papua, Indonesia
Chakrabarty, P., Davis, M.P. and Sparks, J.S. (2012)
The first record of a trans-oceanic sister-group relationship between obligate vertebrate troglobites
Sparks, J.S. and Chakrabarty, P. (2012)
Revision of the endemic Malagasy cavefish genus Typhleotris (Teleostei: Gobiiformes: Milyeringidae) with discussion of its phylogenetic placement and description of a new species
Chakrabarty, P., Davis, M.P. and Sparks, J.S. (2012)
The first record of a trans-oceanic sister-group relationship between obligate vertebrate troglobites
Environmental Protection Authority (2012)
A review of subterranean fauna assessment in Western Australia. Discussion Paper. February 2012
Humphreys, W., Tetu, S., Elbourne, L., Gillings, M., Seymour, J., Mitchell, J. and Paulsen, I. (2012)
Geochemical and microbial diversity of Bundera Sinkhole, an anchialine system in the eastern Indian Ocean
Kim, B.J (2012)
New record of a rare hypogean gobiid, Luciogobius pallidus from jeju Island, Korea
Sparks, J.S. and Chakrabarty, P. (2012)
Revision of the endemic Malagasy cavefish genus Typhleotris (Teleostei: Gobiiformes: Milyeringidae) with discussion of its phylogenetic placement and description of a new species
Sparks, J.S. and Chakrabarty, P. (2012)
Revision of the endemic Malagasy cavefish genus Typhleotris (Teleostei: Gobiiformes: Milyeringidae) with discussion of its phylogenetic placement and description of a new species
Jin, Xiaoxiao, Sun, Yuena, Zhao, Shenglong and Wang, Rixin (2013)
Mitochondrial genome of the Luciogobius platycephalus (Perciformes, Gobioidei)
Tornabene, L., Chen, Y.G. and Pezold, F. (2013)
Gobies are deeply divided: phylogenetic evidence from nuclear DNA (Teleostei: Gobioidei: Gobiidae)
Samonds K.E., Godfrey L.R., Ali J.R., Goodman S.M., Vences M., Sutherland, M.R. Irwin, M.T. and Krause, D.W. (2013)
Imperfect Isolation: Factors and Filters Shaping Madagascar’s Extant Vertebrate Fauna
Samonds K.E., Godfrey L.R., Ali J.R., Goodman S.M., Vences M., Sutherland, M.R. Irwin, M.T. and Krause, D.W. (2013)
Imperfect Isolation: Factors and Filters Shaping Madagascar’s Extant Vertebrate Fauna
Samonds K.E., Godfrey L.R., Ali J.R., Goodman S.M., Vences M., Sutherland, M.R. Irwin, M.T. and Krause, D.W. (2013)
Imperfect Isolation: Factors and Filters Shaping Madagascar’s Extant Vertebrate Fauna
Humphreys, G., Alexander, J., Harvey, M.S. and Humphreys, W.F. (2013)
The subterranean fauna of Barrow Island, northwestern Australia: 10 years on
Larson, H.K., Foster, R., Humphreys, W.F. and Stevens, M. (2013)
A new species of blind cave gudgeon Milyeringa (Pisces: Gobioidei, Eleotridaee) from Barrow Island, Western Australia, with a redescription of M. veritas Whitley
Tornabene, L., Chen, Y.G. and Pezold, F. (2013)
Gobies are deeply divided: phylogenetic evidence from nuclear DNA (Teleostei: Gobioidei: Gobiidae)
Jin, Xiaoxiao, Sun, Yuena, Zhao, Shenglong and Wang, Rixin (2013)
Mitochondrial genome of the Luciogobius platycephalus (Perciformes, Gobioidei)
Jin, Xiaoxiao, Sun, Yuena, Zhao, Shenglong and Wang, Rixin (2013)
Mitochondrial genome of the Luciogobius platycephalus (Perciformes, Gobioidei)
Cho, Hyun-Geun and Choi, Seung-Ho (2014)
First Record of Two Gobiid Fishes, Luciogobius elongatus, L. platycephalus (Perciformes: Gobiidae) from Korea
Morgan, D.L., Unmack, P.J., Beatty, S.J., Ebner, B.C., Allen, M.G., Keleher, J., Donaldson, J.A. and Murphy, J. (2014)
An overview of the 'freshwater fishes' of Western Australia
Cho, Hyun-Geun and Choi, Seung-Ho (2014)
First Record of Two Gobiid Fishes, Luciogobius elongatus, L. platycephalus (Perciformes: Gobiidae) from Korea
Cho, Hyun-Geun and Choi, Seung-Ho (2014)
First Record of Two Gobiid Fishes, Luciogobius elongatus, L. platycephalus (Perciformes: Gobiidae) from Korea
Palacios-Vargas, J.G., Juberthie, C. and Reddell, J. (2014-2015)
Encyclopaedia Biospeologica Mexico
He, Y, Kim, B.J, Hirashima, K and Xiao, T (2015)
Skull and dentition of a hypogean goby Luciogobius palidus revealed by synchrotron microtomography
Yu, Jeong-Nam, Kim, Byung-Jik, Kim, Soonok, Oh, Kyounghee and Lim, Chae Eun (2015)
Complete mitochondrial genome of the rare hypogean gobiid, Luciogobius pallidus, from Korea
He, Y, Kim, B.J, Hirashima, K and Xiao, T (2015)
Skull and dentition of a hypogean goby Luciogobius palidus revealed by synchrotron microtomography
Yu, Jeong-Nam, Kim, Byung-Jik, Kim, Soonok, Oh, Kyounghee and Lim, Chae Eun (2015)
Complete mitochondrial genome of the rare hypogean gobiid, Luciogobius pallidus, from Korea
He, Y, Kim, B.J, Hirashima, K and Xiao, T (2015)
Skull and dentition of a hypogean goby Luciogobius palidus revealed by synchrotron microtomography
Dworak, L., Rasoloariniaina, J.R., Raminosoa, N. and Englert, A. (2015)
Hydrogéologie dans le sud-ouest de Madagascar.
Dworak, L., Rasoloariniaina, J.R., Raminosoa, N. and Englert, A. (2015)
Hydrogéologie dans le sud-ouest de Madagascar.
Dworak, L., Rasoloariniaina, J.R., Raminosoa, N. and Englert, A. (2015)
Hydrogéologie dans le sud-ouest de Madagascar.
Bishop, R.E., Humphreys, W.F., Cukrov, N., Zic, V., Boxshall, G.A., Cukrov, M., Iliffe, T.M., Krsinic, F., Moore, W.S., Pohlman, J.W., and Sket, B. (2015)
‘Anchialine’ redefined as a subterranean estuary in a crevicular or cavernous geological setting
Yu, Jeong-Nam, Kim, Byung-Jik, Kim, Soonok, Oh, Kyounghee and Lim, Chae Eun (2015)
Complete mitochondrial genome of the rare hypogean gobiid, Luciogobius pallidus, from Korea
Rasoloariniaina, J.R., Ganzhorn, J.U., Riemann, J.C. and Raminosoa, N. (2016)
Water quality and biotic interaction of two cavefish species: Typhleotris madagascariensis Petit, 1933 and Typhleotris maraybe Sparks and Chakrabarty, 2012, in the Mahafaly Plateau groundwater syste, Madagascar
Rasoloariniaina, J.R., Ganzhorn, J.U., Riemann, J.C. and Raminosoa, N. (2016)
Water quality and biotic interaction of two cavefish species: Typhleotris madagascariensis Petit, 1933 and Typhleotris maraybe Sparks and Chakrabarty, 2012, in the Mahafaly Plateau groundwater syste, Madagascar
Rasoloariniaina, J.R., Ganzhorn, J.U., Riemann, J.C. and Raminosoa, N. (2016)
Water quality and biotic interaction of two cavefish species: Typhleotris madagascariensis Petit, 1933 and Typhleotris maraybe Sparks and Chakrabarty, 2012, in the Mahafaly Plateau groundwater syste, Madagascar
Walsh, S.J. and Chakrabarty, P. (2016)
A new genus and species of blind sleeper (Teleostei: Eleotridae) from Oaxaca, Mexico: First obligate cave Gobiiform in the western hemisphere
Humphreys, W. F. (2017)
Australasian subterranean biodiversity
Vences, M., Rasoloariniaina, J.R. and Riemann, J.C. (2018)
A preliminary assessment of genetic divergence and distribution of Malagasy cave fish in the genus Typhleotris (Teleostei: Milyeringidae)
Moore, G.I. (2018)
New morphological data and live photographs of the rare subterranean blind cave eel Ophisternon candidum (Synbranchidae) from north‑western Australia
Kuang, T., Tornabene, L., Lia, J., Jiang, J., Chakrabarty, P., Sparks, J.S., Naylor, G.J.P. and Lia, C. (2018)
Phylogenomic analysis on the exceptionally diverse fish clade Gobioidei (Actinopterygii: Gobiiformes) and data-filtering based on molecular clocklikeness
Vences, M., Rasoloariniaina, J.R. and Riemann, J.C. (2018)
A preliminary assessment of genetic divergence and distribution of Malagasy cave fish in the genus Typhleotris (Teleostei: Milyeringidae)
Moore, G.I., Humphreys, W.F., Foster, R. (2018)
New populations of the rare subterranean Blind Cave Eel Ophisternon candidum (Synbranchidae) reveal recent historical connections throughout northwestern Australia
Kuang, T., Tornabene, L., Lia, J., Jiang, J., Chakrabarty, P., Sparks, J.S., Naylor, G.J.P. and Lia, C. (2018)
Phylogenomic analysis on the exceptionally diverse fish clade Gobioidei (Actinopterygii: Gobiiformes) and data-filtering based on molecular clocklikeness
Kuang, T., Tornabene, L., Lia, J., Jiang, J., Chakrabarty, P., Sparks, J.S., Naylor, G.J.P. and Lia, C. (2018)
Phylogenomic analysis on the exceptionally diverse fish clade Gobioidei (Actinopterygii: Gobiiformes) and data-filtering based on molecular clocklikeness
Kuang, T., Tornabene, L., Lia, J., Jiang, J., Chakrabarty, P., Sparks, J.S., Naylor, G.J.P. and Lia, C. (2018)
Phylogenomic analysis on the exceptionally diverse fish clade Gobioidei (Actinopterygii: Gobiiformes) and data-filtering based on molecular clocklikeness
Kuang, T., Tornabene, L., Lia, J., Jiang, J., Chakrabarty, P., Sparks, J.S., Naylor, G.J.P. and Lia, C. (2018)
Phylogenomic analysis on the exceptionally diverse fish clade Gobioidei (Actinopterygii: Gobiiformes) and data-filtering based on molecular clocklikeness
Page, T.J., Hughes, J.M., Real, K.M., Stevens, M.I., King, R.A. and Humphreys, W.F. (2018)
Allegory of a cave crustacean: systematic and biogeographic reality of Halosbaena (Peracarida: Thermosbaenacea) sought with molecular data at multiple scales
Kuang, T., Tornabene, L., Lia, J., Jiang, J., Chakrabarty, P., Sparks, J.S., Naylor, G.J.P. and Lia, C. (2018)
Phylogenomic analysis on the exceptionally diverse fish clade Gobioidei (Actinopterygii: Gobiiformes) and data-filtering based on molecular clocklikeness
Halse, S. (2018)
Subterranean fauna of the arid zone
Kuang, T., Tornabene, L., Lia, J., Jiang, J., Chakrabarty, P., Sparks, J.S., Naylor, G.J.P. and Lia, C. (2018)
Phylogenomic analysis on the exceptionally diverse fish clade Gobioidei (Actinopterygii: Gobiiformes) and data-filtering based on molecular clocklikeness
Kuang, T., Tornabene, L., Lia, J., Jiang, J., Chakrabarty, P., Sparks, J.S., Naylor, G.J.P. and Lia, C. (2018)
Phylogenomic analysis on the exceptionally diverse fish clade Gobioidei (Actinopterygii: Gobiiformes) and data-filtering based on molecular clocklikeness
Page, T.J.,Stevens, M.I., Adams, M., Foster, R. Velasco-Castrillón, A. and Humphreys, W.F. (2018)
Multiple molecular markers reinforce the systematic framework of unique Australian cave fishes (Milyeringa : Gobioidei)
Kuang, T., Tornabene, L., Lia, J., Jiang, J., Chakrabarty, P., Sparks, J.S., Naylor, G.J.P. and Lia, C. (2018)
Phylogenomic analysis on the exceptionally diverse fish clade Gobioidei (Actinopterygii: Gobiiformes) and data-filtering based on molecular clocklikeness
Larson, H.K. and Husana, D.E.M. (2018)
A new species of the blind goby Caecogobius (Gobioidei, Gobiidae, Gobionellinae) from a cave system on Mindanao Island, the Philippines
Jun, J., Choi, S.-H. and Kim, H.Y. (2018)
Characterization of the complete mitochondrial genomes and phylogenetic analysis of the two Luciogobius species (Perciformes, Gobionellinae) from Korea
Kuang, T., Tornabene, L., Lia, J., Jiang, J., Chakrabarty, P., Sparks, J.S., Naylor, G.J.P. and Lia, C. (2018)
Phylogenomic analysis on the exceptionally diverse fish clade Gobioidei (Actinopterygii: Gobiiformes) and data-filtering based on molecular clocklikeness
Larson, H.K. and Husana, D.E.M. (2018)
A new species of the blind goby Caecogobius (Gobioidei, Gobiidae, Gobionellinae) from a cave system on Mindanao Island, the Philippines
Jun, J., Choi, S.-H. and Kim, H.Y. (2018)
Characterization of the complete mitochondrial genomes and phylogenetic analysis of the two Luciogobius species (Perciformes, Gobionellinae) from Korea
Kuang, T., Tornabene, L., Lia, J., Jiang, J., Chakrabarty, P., Sparks, J.S., Naylor, G.J.P. and Lia, C. (2018)
Phylogenomic analysis on the exceptionally diverse fish clade Gobioidei (Actinopterygii: Gobiiformes) and data-filtering based on molecular clocklikeness
Jun, J., Choi, S.-H. and Kim, H.Y. (2018)
Characterization of the complete mitochondrial genomes and phylogenetic analysis of the two Luciogobius species (Perciformes, Gobionellinae) from Korea
Kuang, T., Tornabene, L., Lia, J., Jiang, J., Chakrabarty, P., Sparks, J.S., Naylor, G.J.P. and Lia, C. (2018)
Phylogenomic analysis on the exceptionally diverse fish clade Gobioidei (Actinopterygii: Gobiiformes) and data-filtering based on molecular clocklikeness
Jun, J., Choi, S.-H. and Kim, H.Y. (2018)
Characterization of the complete mitochondrial genomes and phylogenetic analysis of the two Luciogobius species (Perciformes, Gobionellinae) from Korea
Kuang, T., Tornabene, L., Lia, J., Jiang, J., Chakrabarty, P., Sparks, J.S., Naylor, G.J.P. and Lia, C. (2018)
Phylogenomic analysis on the exceptionally diverse fish clade Gobioidei (Actinopterygii: Gobiiformes) and data-filtering based on molecular clocklikeness
Jun, J., Choi, S.-H. and Kim, H.Y. (2018)
Characterization of the complete mitochondrial genomes and phylogenetic analysis of the two Luciogobius species (Perciformes, Gobionellinae) from Korea
Jun, J., Choi, S.-H. and Kim, H.Y. (2018)
Characterization of the complete mitochondrial genomes and phylogenetic analysis of the two Luciogobius species (Perciformes, Gobionellinae) from Korea
Kuang, T., Tornabene, L., Lia, J., Jiang, J., Chakrabarty, P., Sparks, J.S., Naylor, G.J.P. and Lia, C. (2018)
Phylogenomic analysis on the exceptionally diverse fish clade Gobioidei (Actinopterygii: Gobiiformes) and data-filtering based on molecular clocklikeness
Jun, J., Choi, S.-H. and Kim, H.Y. (2018)
Characterization of the complete mitochondrial genomes and phylogenetic analysis of the two Luciogobius species (Perciformes, Gobionellinae) from Korea
Jun, J., Choi, S.-H. and Kim, H.Y. (2018)
Characterization of the complete mitochondrial genomes and phylogenetic analysis of the two Luciogobius species (Perciformes, Gobionellinae) from Korea
Kuang, T., Tornabene, L., Lia, J., Jiang, J., Chakrabarty, P., Sparks, J.S., Naylor, G.J.P. and Lia, C. (2018)
Phylogenomic analysis on the exceptionally diverse fish clade Gobioidei (Actinopterygii: Gobiiformes) and data-filtering based on molecular clocklikeness
Jun, J., Choi, S.-H. and Kim, H.Y. (2018)
Characterization of the complete mitochondrial genomes and phylogenetic analysis of the two Luciogobius species (Perciformes, Gobionellinae) from Korea
Jun, J., Choi, S.-H. and Kim, H.Y. (2018)
Characterization of the complete mitochondrial genomes and phylogenetic analysis of the two Luciogobius species (Perciformes, Gobionellinae) from Korea
Kuang, T., Tornabene, L., Lia, J., Jiang, J., Chakrabarty, P., Sparks, J.S., Naylor, G.J.P. and Lia, C. (2018)
Phylogenomic analysis on the exceptionally diverse fish clade Gobioidei (Actinopterygii: Gobiiformes) and data-filtering based on molecular clocklikeness
Jun, J., Choi, S.-H. and Kim, H.Y. (2018)
Characterization of the complete mitochondrial genomes and phylogenetic analysis of the two Luciogobius species (Perciformes, Gobionellinae) from Korea
Jun, J., Choi, S.-H. and Kim, H.Y. (2018)
Characterization of the complete mitochondrial genomes and phylogenetic analysis of the two Luciogobius species (Perciformes, Gobionellinae) from Korea
Kuang, T., Tornabene, L., Lia, J., Jiang, J., Chakrabarty, P., Sparks, J.S., Naylor, G.J.P. and Lia, C. (2018)
Phylogenomic analysis on the exceptionally diverse fish clade Gobioidei (Actinopterygii: Gobiiformes) and data-filtering based on molecular clocklikeness
Jun, J., Choi, S.-H. and Kim, H.Y. (2018)
Characterization of the complete mitochondrial genomes and phylogenetic analysis of the two Luciogobius species (Perciformes, Gobionellinae) from Korea
Jun, J., Choi, S.-H. and Kim, H.Y. (2018)
Characterization of the complete mitochondrial genomes and phylogenetic analysis of the two Luciogobius species (Perciformes, Gobionellinae) from Korea
Kuang, T., Tornabene, L., Lia, J., Jiang, J., Chakrabarty, P., Sparks, J.S., Naylor, G.J.P. and Lia, C. (2018)
Phylogenomic analysis on the exceptionally diverse fish clade Gobioidei (Actinopterygii: Gobiiformes) and data-filtering based on molecular clocklikeness
Jun, J., Choi, S.-H. and Kim, H.Y. (2018)
Characterization of the complete mitochondrial genomes and phylogenetic analysis of the two Luciogobius species (Perciformes, Gobionellinae) from Korea
Jun, J., Choi, S.-H. and Kim, H.Y. (2018)
Characterization of the complete mitochondrial genomes and phylogenetic analysis of the two Luciogobius species (Perciformes, Gobionellinae) from Korea
Kuang, T., Tornabene, L., Lia, J., Jiang, J., Chakrabarty, P., Sparks, J.S., Naylor, G.J.P. and Lia, C. (2018)
Phylogenomic analysis on the exceptionally diverse fish clade Gobioidei (Actinopterygii: Gobiiformes) and data-filtering based on molecular clocklikeness
Jun, J., Choi, S.-H. and Kim, H.Y. (2018)
Characterization of the complete mitochondrial genomes and phylogenetic analysis of the two Luciogobius species (Perciformes, Gobionellinae) from Korea
Kuang, T., Tornabene, L., Lia, J., Jiang, J., Chakrabarty, P., Sparks, J.S., Naylor, G.J.P. and Lia, C. (2018)
Phylogenomic analysis on the exceptionally diverse fish clade Gobioidei (Actinopterygii: Gobiiformes) and data-filtering based on molecular clocklikeness
Kuang, T., Tornabene, L., Lia, J., Jiang, J., Chakrabarty, P., Sparks, J.S., Naylor, G.J.P. and Lia, C. (2018)
Phylogenomic analysis on the exceptionally diverse fish clade Gobioidei (Actinopterygii: Gobiiformes) and data-filtering based on molecular clocklikeness
Fricke, R.,Mahafina, J.J., Behivoke, F., Jaonalison, H. Leopold, M. and Ponton, D. (2018)
Annotated checklist of the fishes of Madagascar, southwestern Indian Ocean, with 158 new records
Kuang, T., Tornabene, L., Lia, J., Jiang, J., Chakrabarty, P., Sparks, J.S., Naylor, G.J.P. and Lia, C. (2018)
Phylogenomic analysis on the exceptionally diverse fish clade Gobioidei (Actinopterygii: Gobiiformes) and data-filtering based on molecular clocklikeness
Fricke, R.,Mahafina, J.J., Behivoke, F., Jaonalison, H. Leopold, M. and Ponton, D. (2018)
Annotated checklist of the fishes of Madagascar, southwestern Indian Ocean, with 158 new records
Kuang, T., Tornabene, L., Lia, J., Jiang, J., Chakrabarty, P., Sparks, J.S., Naylor, G.J.P. and Lia, C. (2018)
Phylogenomic analysis on the exceptionally diverse fish clade Gobioidei (Actinopterygii: Gobiiformes) and data-filtering based on molecular clocklikeness
Fricke, R.,Mahafina, J.J., Behivoke, F., Jaonalison, H. Leopold, M. and Ponton, D. (2018)
Annotated checklist of the fishes of Madagascar, southwestern Indian Ocean, with 158 new records
Kuang, T., Tornabene, L., Lia, J., Jiang, J., Chakrabarty, P., Sparks, J.S., Naylor, G.J.P. and Lia, C. (2018)
Phylogenomic analysis on the exceptionally diverse fish clade Gobioidei (Actinopterygii: Gobiiformes) and data-filtering based on molecular clocklikeness
Fricke, R.,Mahafina, J.J., Behivoke, F., Jaonalison, H. Leopold, M. and Ponton, D. (2018)
Annotated checklist of the fishes of Madagascar, southwestern Indian Ocean, with 158 new records
Kuang, T., Tornabene, L., Lia, J., Jiang, J., Chakrabarty, P., Sparks, J.S., Naylor, G.J.P. and Lia, C. (2018)
Phylogenomic analysis on the exceptionally diverse fish clade Gobioidei (Actinopterygii: Gobiiformes) and data-filtering based on molecular clocklikeness
Fricke, R.,Mahafina, J.J., Behivoke, F., Jaonalison, H. Leopold, M. and Ponton, D. (2018)
Annotated checklist of the fishes of Madagascar, southwestern Indian Ocean, with 158 new records
Kuang, T., Tornabene, L., Lia, J., Jiang, J., Chakrabarty, P., Sparks, J.S., Naylor, G.J.P. and Lia, C. (2018)
Phylogenomic analysis on the exceptionally diverse fish clade Gobioidei (Actinopterygii: Gobiiformes) and data-filtering based on molecular clocklikeness
Kuang, T., Tornabene, L., Lia, J., Jiang, J., Chakrabarty, P., Sparks, J.S., Naylor, G.J.P. and Lia, C. (2018)
Phylogenomic analysis on the exceptionally diverse fish clade Gobioidei (Actinopterygii: Gobiiformes) and data-filtering based on molecular clocklikeness
Kuang, T., Tornabene, L., Lia, J., Jiang, J., Chakrabarty, P., Sparks, J.S., Naylor, G.J.P. and Lia, C. (2018)
Phylogenomic analysis on the exceptionally diverse fish clade Gobioidei (Actinopterygii: Gobiiformes) and data-filtering based on molecular clocklikeness
Kuang, T., Tornabene, L., Lia, J., Jiang, J., Chakrabarty, P., Sparks, J.S., Naylor, G.J.P. and Lia, C. (2018)
Phylogenomic analysis on the exceptionally diverse fish clade Gobioidei (Actinopterygii: Gobiiformes) and data-filtering based on molecular clocklikeness
Wang, P., Zhao, C., Fan, S., Yan, L. and Qiu, L. (2018)
Characterization and phylogenetic analysis of the complete mitochondrial genome of Glossogobius giuris (Perciformes: Gobiidae).
Vences, M., Rasoloariniaina, J.R. and Riemann, J.C. (2018)
A preliminary assessment of genetic divergence and distribution of Malagasy cave fish in the genus Typhleotris (Teleostei: Milyeringidae)
Wang, P., Zhao, C., Fan, S., Yan, L. and Qiu, L. (2018)
Characterization and phylogenetic analysis of the complete mitochondrial genome of Glossogobius giuris (Perciformes: Gobiidae).
Kondo, K. and Kato, M. (2019)
Life in coastal pebble sediment: Unique interstitial organism community and selective feeding on meiobenthos by interstitial fishes (Luciogobius: Gobiidae)
Kondo, K. and Kato, M. (2019)
Life in coastal pebble sediment: Unique interstitial organism community and selective feeding on meiobenthos by interstitial fishes (Luciogobius: Gobiidae)
Kondo, K. and Kato, M. (2019)
Life in coastal pebble sediment: Unique interstitial organism community and selective feeding on meiobenthos by interstitial fishes (Luciogobius: Gobiidae)
Kondo, K. and Kato, M. (2019)
Life in coastal pebble sediment: Unique interstitial organism community and selective feeding on meiobenthos by interstitial fishes (Luciogobius: Gobiidae)
Kondo, K. and Kato, M. (2019)
Life in coastal pebble sediment: Unique interstitial organism community and selective feeding on meiobenthos by interstitial fishes (Luciogobius: Gobiidae)
Perina, G., Camacho, A., Huey, J., Horwitz, P. and Koenders, A. (2019)
The role of allopatric speciation and ancient origins of Bathynellidae (Crustacea) in the Pilbara (Western Australia): two new genera from the De Grey River catchment
Kondo, K. and Kato, M. (2019)
Life in coastal pebble sediment: Unique interstitial organism community and selective feeding on meiobenthos by interstitial fishes (Luciogobius: Gobiidae)
Kondo, K. and Kato, M. (2019)
Life in coastal pebble sediment: Unique interstitial organism community and selective feeding on meiobenthos by interstitial fishes (Luciogobius: Gobiidae)
Kondo, K. and Kato, M. (2019)
Life in coastal pebble sediment: Unique interstitial organism community and selective feeding on meiobenthos by interstitial fishes (Luciogobius: Gobiidae)
Kondo, K. and Kato, M. (2019)
Life in coastal pebble sediment: Unique interstitial organism community and selective feeding on meiobenthos by interstitial fishes (Luciogobius: Gobiidae)
Kondo, K. and Kato, M. (2019)
Life in coastal pebble sediment: Unique interstitial organism community and selective feeding on meiobenthos by interstitial fishes (Luciogobius: Gobiidae)
Kondo, K. and Kato, M. (2019)
Life in coastal pebble sediment: Unique interstitial organism community and selective feeding on meiobenthos by interstitial fishes (Luciogobius: Gobiidae)
Gilli, E. (2019)
The Ankarana Plateau in Madagascar Tsingy, Caves, Volcanoes and Sapphires
Kondo, K. and Kato, M. (2019)
Life in coastal pebble sediment: Unique interstitial organism community and selective feeding on meiobenthos by interstitial fishes (Luciogobius: Gobiidae)
Kondo, K. and Kato, M. (2019)
Life in coastal pebble sediment: Unique interstitial organism community and selective feeding on meiobenthos by interstitial fishes (Luciogobius: Gobiidae)
Kondo, K. and Kato, M. (2019)
Life in coastal pebble sediment: Unique interstitial organism community and selective feeding on meiobenthos by interstitial fishes (Luciogobius: Gobiidae)
Kondo, K. and Kato, M. (2019)
Life in coastal pebble sediment: Unique interstitial organism community and selective feeding on meiobenthos by interstitial fishes (Luciogobius: Gobiidae)
Kondo, K. and Kato, M. (2019)
Life in coastal pebble sediment: Unique interstitial organism community and selective feeding on meiobenthos by interstitial fishes (Luciogobius: Gobiidae)
Perina, G., Camacho, A.I., Huey, J., Horwitz, P. and Koenders, A. (2019)
New Bathynellidae (Crustacea) taxa and their relationships in the Fortescue catchment aquifers of the Pilbara region, Western Australia, Systematics and Biodiversity
Kondo, K. and Kato, M. (2019)
Life in coastal pebble sediment: Unique interstitial organism community and selective feeding on meiobenthos by interstitial fishes (Luciogobius: Gobiidae)