Conference Paper

The role of Cis-Regulatory elements in morphological adaptation to cave environment in Astyanax mexicanus

Gil-Galvez, A., de la Calle Mustienes, E., Neto, A.., Bilandžija, H., Jeffery, W.R., Gómez-Skarmeta, J.L.

Record Number:
4300
Year:
2019
Abstract:
Cis-regulatory elements and regulatory landscapes are essential for evolution, defining how and where the genes should be expressed. Despite their obvious importance, they have been the least understood DNA regulatory elements, until recently. One of our main questions is how Cis- Regulatory elements (CREs) appear and are modified during evolution. Here we aim to elucidate how the regulatory information impacts on the phenotypic adaptation to new environments at a micro evolutionary level. For that purpose, we will use Astyanax mexicanus as a model organism. This fish presents two well morphologically differentiated populations, Surface Fish and Cavefish. For instance, Cavefish has lost pigmentation, the eyes, and has developed an increased number and size of neuromasts. Therefore, the comparison of the activity of CREs during development in both surface and cavefish could provide us with new insights about the relationship between a certain phenotype and the underlying gene-regulatory network. Also, this approach could be fundamental for modeling some human diseases in cavefish, like age-related macular degeneration or Retinitis pigmentosa. In order to identify CREs in Surface Fish and Cavefish, we have used ATAC-seq to determine open chromatin data at different developmental stages in both populations. This approach allowed the successful identification of CREs that show differential activity near genes that are important for eye development and other cave-specific traits. Furthermore, we aim to integrate this information with chromosome architecture. For that purpose, we generated HiChIP data for H3K4me3, which provides a genome-wide map of chromatin contacts from all active promoters helping us to connect CREs to target genes. Together, our ATAC-seq and H3K4me3 HiChIP data will allow us to determine how regulatory landscapes of critical developmental genes has been modified during the cave life adaptation of Astyanax mexicanus.
Times Cited:
1
Conference Name:
Astyanax Interrnational Meeting
Related Records:
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