Conference Paper

Molecular decay of light-processing genes in cavefishes: assessing the effects of time, genome architecture and gene flow

Policarpo, M., Fumey, J., Lafargeas, P., Legendre, L., Naquin, D., Thermes, C., Møller, P.R., Bernatchez, L., García-Machado, E., Rétaux, S. and Casane, D.

Record Number:
4277
Year:
2019
Abstract:
In order to better understand the dynamic of molecular decay of genes that are most likely useless for cavefishes living in total darkness, we analysed the distribution of putative loss-of-function (LoF) mutations in light processing genes of several cavefish species. Only one LoF mutation was found in the Astyanax mexicanus population of blind fish from the Pachón cave. This LoF mutation is in the gene pde6b, it is very recent, specific to this cave and it did not yet reach fixation, in accordance with a very recent origin of this cave population, most likely during the late Pleistocene. We also found two large deletions that lead to the loss of 3 opsins in several cave populations. In the tetraploid genus Sinocyclocheilus, the eyed species S. grahami has accumulated LoF mutations but less so than the small-eyed S. rhinocerous which accumulated less LoF mutations than the blind S. anshuiensis, in accordance with cumulative effect of polyploidization and cave adaptation on the rate of gene decay. In the genus Lucifuga, more LoF mutations were also found in the blind L. dentata than the small-eyed Lucifuga sp. (Holguin). The distribution of the number of LoF mutations per gene in L. dentata suggests that the whole set of genes analysed is dispensable in caves whereas most genes are still under selection to maintain them functional in Lucifuga sp. (Holguin). Molecular dating based on the number of pseudogenes shows that L. dentata evolved in the cave environment during the Pleistocene but much earlier than A. mexicanus
Times Cited:
5
Conference Name:
Astyanax Interrnational Meeting
Related Records:
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