Subterranean Fishes of the World

Journal Article

Contrasted gene decay in subterranean vertebrates: insights from cavefishes and fossorial mammals

Policarpo, M., Fumey, J., Lafargeas, P., Naquin, D., Thermes, C., Naville, M., Dechaud, C., Volff, J.-M., Cabau, C., Klopp, C., Rask Møller, P., Bernatchez, L., García-Machado, E., Rétaux, S. and Casane, D.

Record Number:

4554

Year:

2020

Journal:

bioRxiv

Notes:

Now published in Molecular Biology and Evolution msaa249 https://doi.org/10.1093/molbev/msaa249

PMCID:

https://doi.org/10.1101/2020.03.05.978213

URL:

https://www.biorxiv.org/content/10.1101/2020.03.05.978213v1

Abstract:

Evolution sometimes proceeds by loss, especially when structures and genes become dispensable after an environmental shift relaxing functional constraints. Gene decay can serve as a read-out of this evolutionary process. Animals living in the dark are outstanding models, in particular cavefishes as hundreds of species evolved independently during very different periods of time in absence of light. Here, we sought to understand some general principals on the extent and tempo of decay of several gene sets in cavefishes. The analysis of the genomes of two Cuban species belonging to the genus Lucifuga provides evidence for the most massive loss of eye genes reported so far in cavefishes. Comparisons with a recently-evolved cave population of Astyanax mexicanus and three species belonging to the tetraploid Chinese genus Sinocyclocheilus revealed the combined effects of the level of eye regression, time and genome ploidy on the number of eye pseudogenes. In sharp contrast, most circadian clock and pigmentation genes appeared under strong selection. In cavefishes for which complete genomes are available, the limited extent of eye gene decay and the very small number of loss of function (LoF) mutations per pseudogene suggest that eye degeneration is never very ancient, ranging from early to late Pleistocene. This is in sharp contrast with the identification of several eye pseudogenes carrying many LoF mutations in ancient fossorial mammals. Our analyses support the hypothesis that blind fishes cannot thrive more than a few millions of years in cave ecosystems. Key words: cavefishes, eye genes, pseudogenization, machine learning, relaxed selection, molecular dating.

Times Cited:

Relevent Species:

Astyanax jordani (Hubbs and Innes 1936) Buckup 2003 Lucifuga dentata Poey 1858 Lucifuga gibarensis Hernandez, Moller, Casane and Garcia-Machado 2020 Sinocyclocheilus anshuiensis Gan, Wu, Wei and Yang 2013 Sinocyclocheilus rhinocerous Li and Tao 1994

Related Records:

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Pfeiffer, W. (1967)

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Reddell, J.R. (1967)

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Pfeiffer, W. (1967)

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Pfeiffer, W. (1967)

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Wilkens, H. (1968)

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Campos, H. (1969)

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Mattheij, J.A., Sprangers, J.A.P. and Van Oordt, P.G.W.J. (1969)

The site of prolactin secretion in the pituitary gland of the stenohaline teleost Anoptichthys jordani and the effects of this hormone on mucous cells

Morris, R.A. (1969)

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Popper, A.N. (1969)

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Wilkens, H. (1970)

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Mattheij, J.A. (1970)

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Gertychowa, R. (1970)

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Weiss, B. and Martini, J. (1970)

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Whitt, G.S. and Maeda, F.S. (1970)

Lactate dehydrogenase gene function in the blind cave fish, Anoptichthys jordani, and other characins

Popper, A.N. (1970)

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Wilkens, H. (1970)

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Wilkens, H. (1970)

Beitrage zur Degenerations des Melaninpigments bei cavernicolen Sippen des Astyanax mexicanus (Filippi) (Characidae, Pisces)

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Wilkens, H. (1971)

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Juberthie, C. (1971)

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Gertychowa, R. (1971)

Heliotaktyzm mlodych rybek jaskiniowych Anoptichthys jordani Hubbs et Innes

Mollhagen, A. (1971)

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Reddell, J.R. and Mitchell, R.W. (1971)

A checklist of the cave fauna of Mexico. I Sierra de El Abra,Tamaulipas and San Luis Potosi

Wiley, S. and Mitchell, R.W. (1971)

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Wiley, S. and Mitchell, R.W. (1971)

A bibliography of the Mexican eyeless characib fishes of the genus Astyanax

Parzefall, J. and Wilkens, H. (1972)

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Zaccone, G. (1972)

Comparative histochemical investigations on the mucous cells of the branchial epithelium of Mugil cephalus and Anoptichthys jordani

Wilkens, H. (1972)

Uber das phylogenetische Alter von Hohlentieren. Untersuchungen über die cavernicole Süsswasserfauna Yucatans

Wilkens, H. (1972)

Uber Praadaptionen fur das Holhlenleben, untersucht am Laichverhalten ober- und unterirdischer Populationen des Astyanax mexicanus (Pisces)

Wilkens, H. (1972)

Zur phylogenetischen Ruckbildung des Auges Cavernicler. Untersuchungen an Anoptichthys jordani (= Astyanax mexicanus), Characidae, Pisces

Elliott, W.R. (1972)

Trip report: July - August 1969

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Avise, J.C. and Selander, R.K. (1972)

Evolutionary genetics of cave-dwelling fishes of the genus Astyanax

Wilkens, H. (1973)

Phylogenetic age and degree of reduction in cave animals

Wilkens, H. (1973)

Anciennete phylogenetique et degres de reduction chez les animaux cavernicoles

Zeitlin, S. M. (1973)

Hormonal induction of ovulation and spawning in the blind cave fish, Anoptichthys jordani with the use of human chorionic gonadotropin

Zeitlin, S. M. and McDevitt, D. S. (1973)

Flourescent antibody study of the developing lens of the blind cave fish

Mitchell, R.W. (1973)

Introgression between the Mexican eyeless characin fishes and their epigean ancestors

Thines, G. and LeGrain, J. M. (1973)

Effets de la substance d'alarme sur le comportement des poissons cavernicoles Anoptichthys jordani (Characidae) et Caecobarbus geertsii (Cyprinidae)

Mitchell, R.W. and Elliott, W.R. (1973)

The cave habitats of the Mexican eyeless characin fishes

Schmatolla, E. and Erdmann, G. (1973)

Influence of retino-tectal innervation on cell proliferation and cell migration in the embryonic teleost tectum

Reddell, J.R. and Elliott, W.R. (1973)

A checklist of the cave fauna of Mexico. III Additional records from the Sierra de El Abra, Tamaulipas and San Luis Potosi

Reddell, J.R. and Elliott, W.R. (1973)

A checklist of the cave fauna of Mexico. V Additional records from the Sierra de Guatemala, Tamaulipas

Voneida, T. J. (1973)

A comparative study of retino-tectal projections in the blind cave characin, Astyanax hubbsi, and its sighted ancestor Astyanax mexicanus

Mitchell, R.W. and Elliott, W.R. (1973)

The habitats of the eyeless Characin fishes of the genus Astyanax

Schemmel, C. (1973)

Les organes sensoriels cutanes du genre Astyanax (Pisces, Characidae) chez les formes occupant des biotopes souterraines

Yasuda, K. (1973)

Comparative studies on the swimming behaviour of the blind cave fish and the goldfish

Durand, J.P. (1973)

Aspects ultrastructuraux des mechanismes de la rudimentation retinienne chez l'Anoptichthys adulte forme cavernicole aveugle de l'Astyanax mexicanus (Caracidae, Pisces)

Chakraborty, R. and Nei, M. (1974)

Dynamics of gene differentiation between incompletely isolated populations of unequal size

Taboada, G.S. (1974)

Sinopsis de la espeleofauna Cubana. Serie espeleologica y carsologica No. 43

Pfeiffer, W. (1974)

Pheromones in fish and amphibia

Schemmel, C. (1974)

Ist die cavernicole Micos-population von Astyanax mexicanus (Characidae, Pisces) hybriden ursprungs ?

Schemmel, C. (1974)

Genetische Untersuchungen zur Evolution des Geschmacksapparates bei cavernicolen Fischen

Egar, M.W. (1974)

An ultrastructural study of the optic nerve of the blind cave fish

Sligar, C. (1974)

An investigation of tectal efferents in the blind cave fish, A. hubbsi

Fish, J. (1974)

La Sistema de Los Sabinos. Mexico's longest cave

Omura, Y. (1975)

Influence of light and darkness on the ultrastructure of the pineal organ in the blind cave fish, Astyanax mexicanus

Sadoglu, P. (1975)

Genetic paths leading to blindness in Astyanax mexicanus

Vina, N., Davila, Zaida and Grana, A. (1975)

Contribucion al conocimiento de los peces cavernicolas de Cuba

Pfeiffer, W. (1975)

Uber fluoreszierende Pterine aus der Haut von Cypriniformes (Pisces) und ihre Beziehung zum schreckstoff

Peters, N., Scholl, A. and Wilkens, H. (1975)

Der Micos-Fisch, Hohlenfisch in statu nascendi oder Bastard ?Ein Beitrag zur Evolution der Hohlentiere

Erckens, W. and Weber, F. (1976)

Rudiments of an ability for time measurement in the cavernicolous fish Anoptichthys jordani Hubbs and Innes (Pisces, Characidae)

Wilkens, H (1976)

Genotypic and phenotypic variability in cave animals. Studies on a phylogenetically young cave population of Astyanax mexicanus (Filippi) (Characidae, Pisces)

Wilkens, H. (1976)

Genetic and phenotypic variability in cave animals. Studies on phylogenetically young cave populations of Astyanax mexicanus (Filippi) (Characidae, Pisces)

Voneida, T. J. and Sligar, C. (1976)

A comparative neuroanatomic study of retinal projections in two fishes: Astyanax hubbsi (the blind cave fish) and Astyanax mexicanus

Herwig, H. J. (1976)

Ultrastructural investigations on the pineal organ of a cave fish, Anoptichthys jordani and its ancestor, Astyanax mexicanus

Herwig, H. J. (1976)

Comparative ultrastructural investigations on the pineal organ of the blind cave fish, Anoptichthys jordani and its ancestor, the eyed rive fish, Astyanax mexicanus

Sligar, C. and Voneida, T.J. (1976)

Tectal efferents in the blind cave fish Asyanax hubbsi

Durand, J.P. (1976)

Sur la structure oculaire, l'ultrastructure des muscles extrinseques, des envelopes de l'oeil et de l'epithelium pigmentaire retinien de l'Anoptichthys (forme aveugle de l'Astyanax mexicanus, Characidae, Pisces)

Durand, J.P. (1976)

Rudimentation des yeux chez les poissons et urodeles souterraines

Mitchell, R.W. and Cooke, J.W. (1977)

Preliminary morphometric comparisons of several populations of Mexican eyeless characin fishes of the genus Astyanax

Edwards, R.J. (1977)

Seasonal migrations of Astyanax mexicanus as an adaptation to novel environments

Mitchell, R.W. and Russell, W.H. (1977)

Stream capture in the Huastecan Province of Mexico

Zaccone, G. (1977)

Histology, innervation, and histochemistry of the UB [Ultimobranchial] gland in the Mexican cave fish Anoptichthys jordani Hubbs et Innes (Teleostei, Characidae)

Cooper, J.E. (1977)

[Review of] Mexican eyeless characin fishes of genus Astyanax: Environment, distribution and evolution (Mitchell,R.W., Russell, W.H. and Elliott, W.R.)

Wilkens, H. (1977)

Die Rudimenation des Rumpfkanals bei kavernicolen Populationen des Astyanax (Characidae, Pisces)

Mitchell, R.W., Russell, W.H. and Elliott, W.R. (1977)

Mexican eyeless characin fishes, genus Astyanax: Environment,distribution and evolution

Kirby, R.F., Thompson, K.W. and Hubbs, C. (1977)

Karyotypic similarities between the Mexican and blind tetras

Mitchell, R.W. and Elliott, W.R. (1977)

The habitats of the eyeless characin fishes of the genus Astyanax

Pfeiffer, W. (1977)

The distribution of fight reaction and alarn substance cells in fishes

Mitchell, R.W. and Russell, W.H. (1977)

The subsurface waters of the Sierra de El Abra of Mexico

Fish, J. (1977)

Karst hydrogeology and geomorphology of the Sierra de El Abra and the Valles-San Luis Potosi region, Mexico

Yew, D. T. and Yoshihara, H. M. (1977)

An ultrastructural study of the retina of the blind cave fish Astyanax hubbusi (sic)

Mitchell, R.W. (1977)

Introgression between the Mexican eyeless characin fishes and their epigean ancestor, Astyanax mexicanus

Thines, G. and Weyers, M. (1978)

Responses locomotrices du poisson cavernicole Astyanax jordani (Pisces, Characidae) a des signaux periodiques et aperiodiques de lumiere et de temperature

Birkhead, W.S. (1978)

Astyanax mexicanus (Filippi) Mexican Tetra

Thines, G. and Piquemal, M. (1978)

Observations sur les comportements de Lucifuga subterranea Poey (Pisces, Ophidiidae), poisson cavernicole de Cuba

Cohen, D.M. and Nielsen, J.G. (1978)

Guide to the identification of genera of the fish order Ophidiiformes with a tentative classification of the order

Durand, J.P. (1978)

Phenomenes de convergences tissulaires et cytologiques, lies aux processus degeneratifs qui affectent l'oeil chez deux teleoteens cavericoles Asytyanax (Anoptichthys) mexicanus (Characidae) et Lucifuga (Stygicola) dentatus (Ophidiidae)

Durand, J.P. (1978)

Durand, J.P. (1979)

Aspects ultrastructuraux des mechanismes de la rudimentation retinienne chez l'Anoptichthys adult, forme cavernicole aveugle de l'Astyanax mexicanus (Characidae, Pisces)

Fish, S.E. and Voneida, T.J. (1979)

Extravisual neurons in the optic tectum of a sighted and unsighted fish. 5:784

Weissert, R. (1979)

Dressurexperimente und Verhaltensbeobachtungen zum Formunterscheidingsvermogen der blinden Hohlenfisches Anoptichthys jordani Hubbs et Innes

Sadoglu, P. (1979)

A breeding method for blind Astyanax mexicanus based on annual spawning patterns

Wilkens, H., Peters, H. and Schemmel, C. (1979)

Gesetzmassigkeiten der regressiven Evolution

Woodhead, A. D. and Achey, P. M. (1979)

Photoreactivating enzyme in the blind cave fish, Anoptichthys jordani

Pactl, J. (1979)

Neue Beitrage zur Kenntnis der Apterygoten-Sammlung des Zoologischen Instituts und Zoologischen Museums der Universitat Hamburg. 6. Weitere Doppel - und Borstenschwanze (Diplura: Campodeidae; Thysanura: Lepismatidae und Nicoletiidae)

Wilkens, H. (1980)

Prinzipien der Manifestation polygener Systeme

Wilkens, H. (1980)

Zur Problematik der Rudimentation, untersucht an der Ontogenie des Auges von Hohlenfischen (Astyanax mexicanus)

Nunez Jimenez, A. (1980)

40 anos explorando a Cuba

Schemmel, C. (1980)

Studies on the genetics of feeding behaviour in the cave fish Astyanax mexicanus f. Anoptichthys. An example of apparent monofactorial inheritance by polygenes

Weissert, R. (1980)

Formunterscheidung durch einer blinden Hohlenfisch (Anoptichthys jordani, Hubbs et Innes)

Varela, E., Barros, O. and Jimenez, S. (1980)

The effects of sugar-waste disposal on a karstic limestone aquifer

Vergara, R. (1980)

Principales caracteristicas de la ictiofauna dulceacuicola cubana

Vergara, R. (1980)

Estudio fenetico de los peces ciegos del genero Lucifuga

Vergara, R. (1980)

Estudio filogenetico del los peces ciegos del genero Lucifuga (Pisces, Ophidiidae). I Sistematica filogenetica

Quinn, T. P. (1980)

Locomotor responses of juvenile blind cavefish, Astyanax jordani, to the odors of conspecifics

Erckens, W. (1981)

Analyse von versuchen zur Erforschung der Grundlagen der tagesperiodishen Aktivistatsvertelung einer ober- und einer unterirdischen Populationen des Astyanax mexicanus (Characidae, Pisces)

Dolle, A. (1981)

Uber Ablauf und Function des Aggressionsverhaltens von Astyanax mexicanus (Charicidae, Pisces) unter Berucksichtigung zweir Hohlenpopulationen

Erckens, W. (1981)

The activity controlling time-system in epigean and hypogean populations of Astynax mexicanus (Charicidae, Pisces)

Reddell, J. R. (1981)

A review of the cavernicole fauna of Mexico, Guatemala and Belize

Wilkens, H. (1981)

Regressive evolution and phylogenetic age

Wourms, J.P. (1981)

Viviparity: The maternal-fetal relationship in fishes

Campenhausen, C., Riess, I. and Weissert, R. (1981)

Detection of stationary objects by blind cave fish Anoptichthys jordani (Characidae)

Wourms, J.P. (1981)

Viviparity: The maternal-fetal relationship in fishes

Weissert, R. and Campenhausen, C. (1981)

Discrimination between stationary objects by the blind cave fish Anoptichthys jordani (Characidae)

Nalbant, T. T. (1981)

A study of the subterranean species of Lucifuga from Cuba, with the description of Lucifuga simile sp. n. (Pisces, Ophidiiformes, Bythitidae)

Herwig, H. J. (1981)

The pineal organ. An ultrastructural and biochemical study on the pineal organ of Hemigrammus caudovittatus and other closely related characid fish with special reference to the Mexican blind cave fish Astyanax mexicanus

Vergara, R. (1981)

Estudio filogenetico del los peces ciegos del genero Lucifuga (Pisces, Ophidiidae). II Bibliografia filogenetica

Vergara, R. (1981)

Estudio filogenetico del los peces ciegos del genero Lucifuga (Pisces, Ophidiidae). III Aspectos evolutivos

Erckens, W. and Martin, W. (1982)

Exogenous and endogenous control of swimming activity in Astyanax mexicanus (Characidae, Pisces) by direct light response and by circadian oscillator. I Analyses of the time control system of an epigean river population

Erckens, W. and Martin, W. (1982)

Exogenous and endogenous control of swimming activity in Astyanax mexicanus (Characidae, Pisces) by direct light response and by a circadian oscillator. II Features of time controled behaviour of a cave population and their comparison to an ancestral epig

Tabata, M. (1982)

Persistence of pineal photosensory function in blind cave fish, Astyanax mexicanus

Jankowska, M. and Thines, G. (1982)

Etude comparative de la densite de groupes de poissons cavernicoles et epigee (Characidae, Cyprinidae, Clariidae)

Romero, A. (1982)

Troglophilic behaviour in a population of Astyanax fasciatus (Characidae): A route to cave colonisation ?

Rose, FL. and Mitchell, R.W. (1982)

Comparative lipid values of epigean and cave adapted Astyanax

Lamprecht, G. and Weber, F. (1982)

A test for the biological significance of circadian clocks: Evolutionary regression of the time measuring ability in cavernicolous animals

Senkel, S. (1983)

Zum Schwarmverhalten von Bastarden zwischen Fluss- und Hohlenpopulationen bei Astyanax mexicanus (Pisces, Characidae)

Parzefall, J. (1983)

Zur verebung von Verhaltensweisen bei Hohlentieren und ihren oberirdischen Verwandten

Zilles, K., Tillmann, B. and Bennemann, R. (1983)

The development of the eye in Astyanax mexicanus (Characidae,Pisces), its blind cave derivative, Anoptichthys jordani (Characidae, Pisces, and their crossbreeds. A scanning and transmission electron microscopic study

Parzefall, J. (1983)

Field observations in epigean and cave populations of the Mexican characid Astyanax mexcanus (Pisces, Characidae)

Romero, A. (1983)

Introgressive hybridisation in the Astyanax fasciatus (Pisces, Characidae) population at La Cueva Chica

Voneida, T.J., Fish, S.E. and Cauller, T.C. (1983)

Central projections of trigeminal and lateral line nerves in the blind cave fish, Astyanax hubbsi

Parzefall, J. (1983)

Field observations in epigean and cave populations of the Mexican characid Astyanax mexcanus (Pisces, Characidae)

Burgess, G.H. (1983)

Lucifuga

Schuppa, M. (1984)

Morphometrische und meristische Untersuchungen an verschiedenen Astyanax-populationen (Characidae) Mexicos

Romero, A. (1984)

Cave colonisation by fish: The role of bat predation

Romero, A. (1984)

Charles Marcus Breder, Jr. 1897-1983

Fruhbeis, B. (1984)

Verhaltensphysiologische Untersuchungen zur Frequenz- unterscheidung und Empfindlichkeit durch das Seitenlinienorgan des blinden Hohlenfisches Anoptichthys jordani (Hubbs et Innes)

Romero, A. (1984)

Responses to light in cave and surface populations of Astyanax fasciatus (Pisces, Characidae): An evolutionary interpretation

Mothes, P. and Jameson, R. (1984)

Sotano de Vasquez

Romero, A. (1984)

Behaviour in an 'intermediate' population of the subterranean dwelling characid Astyanax fasciatus

Wilkens, H. (1984)

Zur Evolution von Polygensystemen, untersucht an ober- unt unterirdischen Populationen des Astyanax mexicanus (Characidae, Pisces)

Voneida, T. J. and Fish, S. E. (1984)

Central nervous system changes related to the reduction of visual inputs in a naturally blind fish (Astyanax hubbsi)

Mangold-Wernado, U. and Pfeiffer, W. (1984)

Zur morphologie des Geruchsorgans von Characoidea (Ostariophysi, Pisces)

Teyke, T. (1985)

Collision with and avoidance of obstacles by blind cave fish Anoptichthys jordani (Characidae)

Romero, A. (1985)

Cave colonisation by fish: role of bat predation

Romero, A. (1985)

Ontogenetic change in phototactic responses of surface and cave populations of Astyanax fasciatus (Pisces, Characidae)

Burchards, H., Dolle, A. and Parzefall, J. (1985)

The aggressive behaviour of an epigean population of Astyanax mexicanus (Characidae, Pisces) and some observations of three subterranean populations

Wilkens, H. (1985)

The evolution of polygenic systems, studies on epigean and cave poplations of Astyanax fasciatus (Characidae, Pisces)

Voneida, TJ and Fish, SE (1985)

An ultrastructural study of retinotectal connections and normal tectical synaptic organisation in the blind cave fish Astyanax hubbsi

Lamprecht, G. and Weber, F. (1985)

Time-keeping mechanisms and their ecological significance in cavernicolous animals

Hassan, E.S. (1985)

Mathematical analysis of the stimulus for the lateral-line argan

Hassan, E.S. (1985)

Mathematical analysis of the stimulus for the lateral line organ

Fricke, D. (1985)

Die Alarmreaktion bei Hohlen- und Flussfisch- populationen von Astyanax mexicanus (Pisces, Characidae)

Romero, A. (1985)

Morphological variation accompanying cave evolution in Astyanax fasciatus (Pisces: Characidae)

Wilkens, H. (1985)

Non-allopatric speciation in cave fishes: Studies in epigean and hypogean Astyanax populations (Characidae, Pisces)

Burchards, H. and Parzefall, J. (1985)

Das Aggressionsverhaltens oberirdischer und unterirdischer hohlenledenden Populationen von Astyanax mexicanus (Pisces, Characidae) und ihrer Bastarde

Huppop, K. (1985)

The role of metabolism in the evolution of cave animals

Romero, A. (1986)

Charles Breder and the Mexican blind cave Characid

Wilkens, H. (1986)

The evolution of polygenic systems. Studies on epigean and cave populations of Astyanax fasciatus (Characidae, Pisces)

Parzefall, J. (1986)

On the heredity of behavior patterns in cave animals and their epigean relatives

Hassan, E.S. (1986)

On the discrimination of spatial intervals by the blind cave fish Anoptichthys jordani

Parzefall, J. (1986)

Behavioural ecology of cave-dwelling fishes

Wilkens, H. and Huppop, K. (1986)

Sympatric speciation in cave fishes ? Studies on a mixed population of epi- and hypogean Astyanax (Characidae, Pisces)

De Fraipont, M. (1986)

La detection chimique de l'odeur des congeneres chex Astyanax mexicanus (forme cavernicole). Responses observees pour des cencentrations egales etablies a partir de groupes de densites differentes

Fraipont, M. (1986)

La detection chimique chez Astyanax mexicanus (forme cavernicole) en fonction de la densite des groupes

Parzefall, J. and Senkel, S. (1986)

Das schwarmverhalten bei oberirdisch und in hohlen lebenden populationen von Peocilia mexicana und Astyanax mexicanus (Peociliidae, Characidae, Pisces)

Parzefall, J. and Senkel, S. (1986)

Schooling behaviour in cavernicolous fish and their epigean conspecifics

Hassan, E.S. (1986)

On the discrimination of spatial intervals by the blind cave fish Anoptichthys jordani

De Fraipont, M. and Thines, G. (1986)

Responses of the cave fish Astyanax mexicanus (Anoptichthys antrobius) to the odor of know or unknown conspecifics

De Fraipont, M. and Thines, G. (1986)

La detection chimique de l'odeur des predaeurs chex Astyanax mexixanus (formes cavernicoles et epigees)

Huppop, K. (1986)

Comparative early life history in surface and cave fish

Huppop, K. (1986)

Oxygen consumption of Astyanax fasciatus (Characidae, Pisces): a comparison of epigean and hypogean populations

Huppop, K. (1987)

Food finding ability in cave fish (Astyanax fasciatus)

Wilkens, H. (1987)

Genetic analysis of evolutionary processes

Fricke, D. (1987)

Reaction to alarm substance in cave populations of Astyanax mexicanus (Characidae, Pisces)

De Fraipont, M. (1987)

La detection chimique chez Astyanax mexicanus (forme cavernicole, Pisces, Characidae), en fonction du sexe

De Fraipont, M. (1987)

La detection chimique chez Astyanax mexicanus (Teleostei, Characidae) (forme cavernicole) en fonction de la densite des groupes

Burgess, G.H. and Franz, R. (1987)

Zoogeography of the Antillean freshwater fish fauna

Diaz-Perez, P.A., Nieto, E. and Abio, G. (1987)

Peces ciegos del genero Lucifuga (Ophidiiformes, Bythitidae) en dos casimbas cubanas

Diaz-Perez, P.A., Nieto, E. and Abio, G. (1987)

Peces ciegos del genero Lucifuga (Ophidiiformes, Bythitidae) en dos casimbas cubanas

Huppop, K. (1988)

Phanomene und Bedeutung der Energieersparnis bei dem Hohlenfisch Astynax fasciatus

Teyke, T. (1988)

Flow field, swimming velocity and boundary layers: parameters which affect the stimulus for the lateral line organ in blind fish

Wilkens, H. (1988)

Evolution and genetics of epigean and cave Astyanax fasciatus (Characidae, Pisces): support for the neutral mutation theory

Coombs, S., Janssen, J. and Webb, J. (1988)

Diversity of lateral line systems: evolutionary and functional considerations

De Fraipont, M. (1988)

The responses of Astyanax mexicanus (Pisces, Characidae, epigean form) to chemical traces of conspecific groups of varying densities

Fricke, D. (1988)

Alarmreaktion und Schwarmverhalten bei ober- und unterirdisch lebenden Populationen der Art Astyanax fasciatus (Cuvier, 1819) und ihrer Bastarde (Characidae, Pisces)

Wilkens, H., Strecker, U. and Yager, J. (1989)

Eye reduction and phylogenetic age of ophidiiform cave fishes

Huppop, K. (1989)

Genetic analysis of oxygen consumption in cave and surface fish of Astyanax fasciatus (Characidea, Pisces): Further support for the neutral mutation theory

Fack, H. and Wilkens, H. (1989)

Eye reduction in hybrids and a naturally viable cave form Astyanax fasciatus (Characidae, Pisces)

Teyke, T. (1989)

Learning and remembering the environment in the blind cave fish Anoptichthys jordani

Langecker, T. G. (1989)

Studies of the light reaction of epigean and cave populations of Astyanax fasciatus (Characidea, Pisces)

Fricke, D. and Parzefall, J. (1989)

Alarm reaction, aggresion and scholing in cave and river populations of Astyanax fasciatus (Pisces, Characidae) and their hybrids

Hassan, E.S. (1989)

Hydrodynamic imaging of the surroundings by the lateral line of the blind cave fish Anoptichthys jordani

Huppop, K. (1989)

Food-finding ability in cave fish (Astyanax fasciatus). (Abstract)

Morris, N (1989)

Sierra De El Abra cave map portfolio

Wilkens, H. (1989)

Genetic analysis of evolutionary processes. (Abstract)

Langecker, T. G. (1990)

The significance of light reactions in blind fish

Langecker, T. G. (1990)

Der Einfluss der Lichtes bei der Evolution von Hohlenfischen

Teyke, T. (1990)

Morphological differences in neuromasts of the blind cave fish Asyanax hubbsi and the sighted river fish Astyanax mexicanus

Klimpel, B. and Parzefall, J. (1990)

Comparative studies of predatory behaviour in cave and river populations of Astyanax fasciatus (Characidae, Pisces)

Langecker, T. G. (1990)

Das Licht als Evolutionsfaktor bei Hohlentieren- untersucht an ober- und unterirdisch lebenden Populationen des Astyanax fasciatus (Characidae, Pisces)

Abdel-Latif, H., Hassan, E.S. and von Campenhausen, C. (1990)

Sensory performance of blind Mexican cave fish after destruction of the canal neuromasts

Parzefall, J. and Fricke, D. (1990)

Alarm raection and schooling in population hybrids of Astyanax (Pisces, Characidae)

Peters, N., Schmidt, W. and Fricke, D. (1990)

Die Feinstruktur der Kolbenzellen (Schreckstoffzellen) in der Epidermis von Astyanax mexicanus Fillippi 1853 (Characidae, Pisces) und seinen Hohlen derivaten "Anoptichthys"

Yokoyama, R. and Yokoyama, S. (1990)

Convergent evolution of the red- and green-like visual pigment genes in fish Astyanax fasciatus and human

Yokoyama, R and Yokoyama, S (1990)

Isolation, DNA sequence and evolution of a color visual pigment gene of the blind cavefish Astyanax fasciatus

Huppop, K. and Wilkens, H. (1991)

Bigger eggs in subterranean Astyanax fasciatus (Characidae, Pisces)

Wilkens, H., Junge, P. and Langecker, T. G. (1991)

Speciation of troglobites: Studies on the San Antonio Cave (Oaxaca, Mexico)

Huppop, K. (1991)

Muskulatur als Fettspeicher beim mexikanischen Hohlensalmler Astyanax fasciatus

Bensouilah, M. and Denizot, J.P. (1991)

Taste buds and neuromasts of Astyanax jordani: Distribution and immunochemical demonstration of co-localised Substance P and Enkephalins

Riedel, G. and Krug, L. (1991)

Olfaktorische Regionen im Vorderhirn des blinden Hohlenfisches Asyanax hubbsi

Campenhausen, C. (1991)

Die Bedentung der "inneren Landkarte" fur die Orientierung - Untersuchungen an blinden Hohlenfischen

Parzefall, J. and Fricke, D. (1991)

Alarm and schooling in population hybrids of Astyanax fasciatus

Langecker, T. G., Wilkens, H. and Junge, P. (1991)

Introgresve hybridisation in the Pachon cave population of Astyanax fasciatus (Teleostei, Characidae)

Langecker, T. G. (1992)

Light sensitivity of cave vertebrates. Behavioural and morphological aspects

Langecker, T. G. (1992)

Persistence of ultrastructurally well devoloped photoreceptor cells in the pineal organ of a phylogenetically old cave dwelling population of Astyanax fasciatus Cuvier, 1819 (Teleostei, Characidae)

Zafar, N.P. and Morgan, E. (1992)

Feeding entrains an endogenous rhythm of swimming activity in the blind Mexican cavefish

Fish, S.E. and Ghosh, P. (1992)

Occulomotor system of a blind cave fish

Wilkens, H. (1992)

Neutral mutations and evolutionary progress

Lamprecht, G. and Weber, F. (1992)

Spontaneous locomotion behaviour in cavernicolous animals: The regression of the endogenous circadian system

Parzefall, J. (1992)

Schooloing behaviour in population hybrids of Astyanax fasciatus and Poecilia mexicana (Pisces, Characidae and Poeciliidae)

Parzefall, J. (1992)

Behavioural aspects in animals living in caves

Langecker, T.G. and Longley, G. (1992)

Blind catfish (Trogloglanis pattersoni and Satan eurystomus) from deep artesian waters. A study on convergent adaptations to cave and deep sea biota

Wilkens, H. and Meyer, M. (1992)

Eye formation and regression during early ontogeny in cave fishes

Coombs S., Janssen J. and Montgomery J. (1992)

Functional and Evolutionary Implications of Peripheral Diversity in Lateral Line Systems

Hassan, E. S., Abdel-Latif, H. and Biebricher, R. (1992)

Studies on the effects of ca++ and co++ on the swimmimg behaviour of the blind Mexican cavefish

De Fraipont, M. (1992)

Response d'Astyanax mexicanus aux stimulations chimiques provenant de groupes de congeneres a differents stades de developpement

Wilkens, H., Langecker, T. G. and Olcese, J. (1993)

Circadian rhythms of melatonin synthesis in the pineal organ of cave-dwelling astyanax fasciatus (Teleostei: Characidae)

Wilkens, H. (1993)

Neutral mutationen und evolutionäre Fortentwicklung

Yokoyama, R. and Yokoyama, S. (1993)

Molecular characterization of a blue visual pigment gene in the fish Astyanax-Fasciatus

Parzefall, J. (1993)

Behavioural ecology of cave-dwelling fishes

Langecker, T. G. (1993)

Genetic analysis of the dorsal light reaction in epigean and cave-dwelling Astyanax fasciatus (Teleostei, Characidae)

Langecker, T. G., Schmale, H. and Wilkens, H. (1993)

Transcription of the opsin gene in degenerate eyes of cave dwelling Astyanax fasciatus (Teleostei, Characidae) and of its conspecific epigean ancestor during early ontogeny

Langecker, T. G., Schmale, H. and Wilkens, H. (1993)

Strukturelle und molekulargenetische Untersuchungen zur Augenreduktion beim Hohlenfisch Astyanax fasciatus (Teleostei, Characidae)

Peters, N., Schacht, V., Schmidt, W. and Wilkens, H. (1993)

Gehirnproportionen und Auspragungsgrad der Sinnesorgane von Astyanax mexicanus (Pisces: Characidae). Ein Vergleich zwischen dem Flussfisch ubd seinen Hohlen-derivaten 'Anoptichthus'

Parzefall, J. (1993)

Schooling behaviour in population hybrids of Astyanax fasciatus and Poecilia mexicana (Pisces, Characidae)

Hoffman, S. and Hausberg, C. (1993)

The aggressive behaviour of the Micos cave population (Astyanax fasciatus, Characidae, Teleostei) after selection for functional eyes in comaprison to an epigean one

Yager, J., Spokane, R. B., Bozanic, J. E., Williams, D. W. and Balado, E. (1994)

An ecological comparison of two anchialine caves in Cuba with emphasis on water chemistry

Li, W.X and Tao, J.N. (1994)

A new species of Cyprinidae from Yunnan, Sinocyclocheilus rhinocerous sp. nov.

Missall, J., Wilkens, H., Langecker, T. G. and Olcese, J. (1994)

Studies on melatonin rhythmicity in a species of cave fish and its surface ancestor Astyanax fasciatus (Cuvier, 1819) (Characidae)

Missal, J, Wilkens, H, Langecker, TG and Olcese, 1994 (1994)

Studies on melatonin rhythmicity in a species of cave fish and its surface ancestor Astyanax fasciatus (Cuvier, 1819) (Characidae).

Teyke, T. and Schaerer, S. (1994)

Blind Mexican cave fish (Astyanax hubbsi) respond to moving visual stimuli

Hausberg, C. (1994)

The aggressive bahaviour of the blind cave-dwelling population of the characid Astyanax fasciatus (Teleostei, Characidae)

Borowsky, R. (1994)

Blind cave tetras of the Sierra Madre Oriental

Montgomery, J., Coombs, S. and Halstead, M. (1995)

Biology of the mechanosensory lateral line in fishes

Yokoyama, R, Knox, BE and Yokoyama, S (1995)

Rhodopsin from the fish Astyanax: Role of Tyrosine 261 in the red shift

Langecker, T. G., Neumann, B., Hausberg, C. and Parzefall, J. (1995)

Evolution of the optical releasers for aggressive behaviour in cave-dwelling Astyanax fasciatus (Teleostei, Characidae)

Langecker, T. G., Wilkens, H. and Schmale, H. (1995)

Developmental constraints in regressive evolution: Studies of the expression of the delta-s crystallin gene in the developing lens of cave-dwelling Astaynax fasciatus (Cuvier, 1819) (Teleostei, Characidae) by in situ hybridisation

Hausberg, C (1995)

Das Aggressionsverhalten von Astyanax fasciatus (Cuvier, 1819) Characidae Teleostei: Ontogenie, Genetik und evolution bei der epigaischen und hypogaischen Form

Yokoyama, S., Meany, A., Wilkens, H. and Yokoyama, R. (1995)

Initial mutational steps towards loss of opsin gene function in cavefish

Wilkens, H. and Langecker, T. G. (1996)

Vom Leben im ewigen Dunkel. Zur Evolution der Hohlenfische

Jeffery, W.R., Hornaday, K. and Martasian, D.P. (1996)

Eye development in the cavefish Astyanax: Role of programmed cell death and the Pax-6 gene. (Abstract).

Borowsky, R. (1996)

The Sierra de El Abra of Northeastern Mexico: blind fish in the worlds largest cave system

Borowsky, R. and Espinasa, L. (1997)

Antiquity and origins of troglobitic Mexican tetras, Astyanax fasciatus

Coy Otero, A., Garcia, N. and Ventosa, L. (1997)

Helmintos de peces cubanos del genero Lucifuga Poey, 1858 (Ophidiiformes: Bythitidae)

Riedel, G. (1997)

The forebrain of the blind cave fish Astyanax hubbsi (Characidae). I. General anatomy of the telencephalon

Riedel, G. and Krug, L. (1997)

The forebrain of the blind cave fish Astyanax hubbsi (Characidae). II. Projections of the olfactory bulb

Li, W., Wu, D., Chen, A. and Tao, J. (1997)

Histological study on the horn-like projection on the head of Sinocyclocheilus rhinocerous

Jeffery, W.R. and Martasian, D P. (1997)

Evolution of eye development in the cavefish Astyanax

Behrens, M., Langecker, T.G., Wilkens, H. and Schmale, H. (1997)

Comparative analysis of Pax-6 sequence and expression in the eye development of the blind cavefish Astyanax fasciatus and its epigean conspecific

Riedel, G. (1998)

Long-term habituation to spatial novelty in blind cave fish (Astyanax hubbsi): role of the telencephalon and its subregions

Wang, D. and Chen, Y.Y. (1998)

On the diagnosis of Sinocyclocheilus and the taxonomic position of its closely related genus Anchicyclocheilus (Cypriniformes: Cyprinidae: Barbinae)

Jeffery, W.R. and Martasian, D.P. (1998)

Evolution of eye regression in the cavefish Astyanax: apoptosis and the Pax-6 gene

Wilkens, H. (1998)

Genetics of cave fish evolution

Wilkens, H. (1998)

Genetics of cave fishes

Jeffery, W.R. (1998)

Evolution of eye regression in the cavefish Astyanax: Apoptosis and the Pax-6 gene

Durand, J.P. (1998)

Degenerescence spontanee des yeax du poisson cavernicole Lucifuga subterraneus Poey, 1861 (Teleostei, Ophidioidei)

Contreras-Balderas, S. and Lozano-Vilano, M.D.L. (1998)

Problemas nomenclaturales de las formas mexicanas del genero Astyanax (Pisces: Characidae)

Behrens, M., Wilkens, H. and Schmale, H. (1998)

Cloning of the alpha A-crystallin genes of a blind cave form and the epigean form of Astyanax mexicanus: a comparative analysis of structure, expression and evolutionary conservation

Garcia Debras, A. and Gonzalez, A.P. (1999)

Estudio sobre la dieta de peces Cubanos (Ophidiiformes: Bythitidae)

Garcia-Debras, A., Gonzalez, A.P. and Yager, J. (1999)

Distribucion geografica de los peces ciegos (Ophidiiformes: Bitytidae) Cubanos

Garcia, N., Coy Otero, A. and Ventosa, L. (1999)

Nematodos asociados a la espeleofauna Cubana

Nielsen, J.G., Cohen, D.M., Markle, D.F. and Robins, C.R. (1999)

Ophidiiform fishes of the world (Order Ophidiiformes). An annotated and illustrated catalogue of pearlfishes, cusk-eels, brotulas and other ophidiiform fishes known to date

Villalobos, J.L., Alvarez, F. and Iliffe, T.M. (1999)

New species of troglobitic shrimps from Mexico, with the description of Troglomexicanus, new genus (Decapoda: Palaemonidae)

Kullander, S. O. (1999)

Fish species - how and why

Natke, C. (1999)

Vergleichende Untersuchungen am optischen System von Fluss- und Hohlenform des Silbersalmlers Astyanax mexicanus (Characidae, Teleostei): Faserdarstellung mit Hilfe fluoreszierender Carbocyanine

Baker, C.F. and Montgomery, J. (1999)

The sensory basis of rheotaxis in the blind Mexican cave fish, Astyanax fasciatus

Estrada, M. (1999)

The ecology and life history of the mexican tetra, Astyanax mexicanus, (Teleostei: Characidae) in the lower Rio Grande Valley, Texas

Huppop, K. (2000)

How do cave animals cope with the food scarcity in caves?

Espinasa, L. and Borowsky, R. (2000)

Eyed cave fish in a karst window

Li, W., Wu, D., Chen, A. and Tao, J. (2000)

The preliminary investigation of geographical distribution and elcological adaptation for cave environment of Sinocyclocheilus rhinocerous - a cyprinid fish

Langecker, T.G. (2000)

The effects of continuous darkness on cave ecology and cavernicolous evolution

Jeffery, W.R., Strickler, A.G., Guiney, S., Heyser, D.G. and Tomarev, S.I. (2000)

Prox1 in eye degeneration and sensory organ compensation during development and evolution of the cavefish Astyanax

Ford, D.C. (2000)

5.3.1. Deep phreatic caves and groundwater systems of the Sierra de El Abra, Mexico

Yamamoto, Y. and Jeffery, W.R. (2000)

Central role for the lens in cave fish eye degeneration

Pennisi, E. (2000)

Embryonic lens prompts eye development

Yamamoto, Y. and Jeffery, W.R. (2001)

[Erratum for: Central role for the lens in cavefish eye degeneration. Science 289:831-833]

Strickler, A.G., Yamamoto, Y. and Jeffery, W.R. (2001)

Early and late changes in Pax6 expression accompany eye degeneration during cavefish development

Boudriot, F and Reutter, K (2001)

Ultrastructure of the taste buds in the blind cave fish Astyanax jordani ("Anoptichthys") and the sighted river fish Astyanax mexicanus (Teleostei, Characidae)

Espinasa, L. and Borowsky, R. (2001)

Origins and relationships of cave populations of the blind Mexican tetra, Astyanax fasciatus, in the Sierra de El Abra

Jeffery, W.R. (2001)

Cavefish as a model system in evolutionary developmental biology

Montgomery, J.C., Coombs, S. and Baker, C.F. (2001)

The mechanosensory lateral line system of the hypogean form of Astyanax fasciatus

Yokoyama, S, and Radlwimmer, F.B. (2001)

The molecular genetics and evolution of red and green color vision in vertebrates

Espinasa, L., Rivas-Manzano, P. and Perez, H.E. (2001)

A new blind cave fish population of genus Astyanax: Geography, morphology and behaviour

Parzefall, J and Hausberg, C (2001)

Ontogeny of the agressive behaviour in epigean and hypogean populations of Astyanax fasciatus (Characidae, teleostei) and their hybrids

Espinasa, L. (2001)

Agressive behaviour and blindness: The cave of troglobitic "Astyanax" populations

Leclerc, P., Deharveng, L., Ng, P.K.L., Juberthie, C. and Decu, V. (2001)

Indonesie

Jeffery, W.R. and Yamamoto, Y. (2001)

Midline signaling by sonic hedgehog controls eye degeneration in Astyanax cavefish

Borowsky, RL and Wilkens, H (2002)

Mapping a cave fish genome: Polygenic systems and regressive evolution

Li, W.X. and Tao, J.N. (2002)

Partial anatomy of the Sinocyclocheilus rhinocerous

Strickler, A.G., Famuditimi, K. and Jeffery, W.R. (2002)

Retinal homeobox genes and the role of cell proliferation in cavefish eye degeneration

Strecker, U. and Wilkens, H. (2002)

Genetic divergence between cave and surface populations of Astyanax in Mexico

Xiao, H, Zhang, R, Feng, J, Ou, Y., M, Li, W, Chen, S and Zan, R (2002)

Nuclear DNA content and ploidy of seventeen species of fishes in Sinocyclocheilus

Wilkens, H (2002)

Convergence of Astyanax cave fish evolution: Genetic evidence from eye reduction

Li, W.X. and Tao, J.N. (2002)

Local dissection of body of the fishes Sinocyclocheilus rhinocerous

Yamamoto, Y. and Jeffery, W.R. (2002)

Probing teleost eye development by lens transplantation

Coombs, S, New, JG and Nelson, M (2002)

Information-processing demands in electrosensory amd mechanosensory lateral line systems

Krejca, J. (2002)

Recent field investigations of blind Astyanax

Parzefall, J and Hausberg, C (2002)

Ontogeny of the agressive behaviour in epigean and hypogean populations of Astyanax fasciatus (Characidae, Teleostei) and their hybrids

Berg, A. and Watson, G.M. (2002)

Rapid recovery of sensory function in blind cave fish treated with anemone repair proteins

Romero, A., Jeffery, W.R. and Yamamoto, Y. (2002)

When cave fish see the light: Reaction norm to light exposure during development in epigean, troglomorphic, and hybrids of Astyanax fasciatus (Charicidae)

Carvalho, M.L., Oliveira, C., Navarrete, M.C., Froehlich, O. and Foresti, F. (2002)

Nuclear DNA content determination in Characiformes fish (Teleostei, Ostariophysi) from the Neotropical region

Dowling, T.E., Martasian, D.P. and Jeffery, W.R. (2002)

Evidence for multiple genetic forms with similar eyeless phenotypes in the blind cavefish, Astyanax mexicanus

Jeffery, W.R., Strickler, A.G. and Yamamoto, Y. (2003)

To see or not to see: Evolution of eye degeneration in Mexican blind cavefish

Strecker, U. (2003)

Polymorphic microsatellites isolated from the cave fish Astyanax fasciatus

Yamamoto, Y., Espinasa, L., Stock, D.W. and Jeffery, W.R. (2003)

Development and evolution of craniofacial patterning is mediated by eye-dependant and -independent processes in the cavefish Astyanax

Strecker, U., Bernatchez, L. and Wilkens, H. (2003)

Genetic divergence between cave and surface populations of Astyanax in Mexico (Characidae, Teleostei)

Romero, A., Green, S.M., Lelonek, M.M. and Stropnicky, K.C. (2003)

One eye but no vision: cavefish with induced eyes do not respond to light

Angel, T.B. (2003)

The neural connectivity of the Torus Semicircularis in the cave dwelling form of Astyanax fasciatus

Parry, J.W.L., Peirson, S. and Wilkens, H. (2003)

Multiple photopigments from the Mexican blind cavefish, Astyanax fasciatus: a microspectrophotometric study

Sarma, S.S.S., Lopez-Romulo, A. and Nandini, S. (2003)

Larval feeding behaviour of blind fish Astyanax fasciatus (Characidae), black tetra Gymnocorymbus ternetzi (Characidae) and angel fish Pterophyllum scalare (Cichlidae) fed zooplankton

Contreras-Balderas, S, Almada-Villela, P, Lozano-Vilano, M de L and Garcia-Ramirez, ME (2003)

Freshwater fish at risk or extinct in Mexico

Wilkens, H. and Strecker, U. (2003)

Convergent evolution of the cavefish Astyanax (Characidae, teleostei): Genetic evidence from reduced eye-size and pigmentation

Porter, M.L. and Crandall, K.A. (2003)

Lost along the way: the significance of evolution in reverse

Espinasa, L. and Jeffery, W.R. (2003)

A troglomorphic sculpin (Pisces: Cottidae) population: Geography, morphology and conservation status

Espinasa, L. and Jeffery, W.R. (2003)

Scientists restore eyes in blind cave fish and find virgin passage

Valdez-Moreno, M. and Contreras-Balderas, S. (2003)

Skull osteology of the characid fish Astyanax mexicanus (Teleostei: Characidae)

Yamamoto, Y (2004)

Cavefish

Fuiman, L.A., Higgs, D.M. and Poling, K.R. (2004)

Changing structure and function of the eye and lateral line system of fishes during development

Yamamoto, Y., Stock, D.W. and Jeffery, W.R. (2004)

Hedgehog signalling controls eye degeneration in blind cavefish

Hooven, T.A., Yamamoto, Y. and Jeffery, W.R. (2004)

Blind cavefish and heat shock protein chaperones: a novel role for hsp90alpha in lens apoptosis

Soares, D., Yamamoto, Y., Strickler, A.G. and Jeffery, W.R. (2004)

The lens has a specific influence on optic nerve and tectum development in the blind cavefish Astyanax

Strecker, U., Faundez, V.H. and Wilkens, H. (2004)

Phylogeography of surface and cave Astyanax (Teleostei) from Central and North America based on cytochrome b sequence data

McCauley, D.W., Hixon, E. and Jeffery, W.R. (2004)

Evolution of pigment cell regression in the cavefish Astyanax: a late step in melanogenesis

Moreira, C.R., Bichuette, M.E., Oyakawa, O.T., de Pinna, M.C.C. and Trajano, E. (2004)

Rediscovery of Stygichthys typhlops Brittan and Bohlke, 1965, an enigmatic subterranean characiform fish from Jaiba karst area, eastern Brazil

Wilkens, H (2004)

The Astyanax model (Teleostei): neutral mutations and directional selection

Burt de Perera, T. (2004)

Fish can encode order in their spatial map

Burt de Perera, T. (2004)

Spatial parameters encoded in the spatial map of the blind mexican cavefish, Astyanax fasciatus

Jeffery, W.R. (2004)

The hypogean phenotype is controlled by pleiotropic midline-signalling genes in the cavefish Astyanax mexicanus

Fish, J. (2004)

Karst hydrology of the Sierra de El Abra

Kocher, T.D., Jeffery, W.R., Parichy, D.M., Peichel, C.L., Streelman, J.T. and Thorgaard, G.H. (2005)

Special Feature—Roundtable discussion. Fish models for studying adaptive evolution and speciation

Jeffery, W.R. (2005)

Evolution of eye degeneration in cavefish: The return of pleiotropy

Jeffery, W.R. (2005)

Adaptive evolution of eye degeneration in the Mexican blind cavefish

Espinasa, L., Yamamoto, Y. and Jeffery, W.R. (2005)

Non-optical releasers for aggressive behaviour in blind and blinded Astyanax (Teleostei: Characidae)

Burt de Perera, T and Braithwaite, VA (2005)

Laterality in a non-visual sensory modality - the lateral line of fish

Trapani, J., Yamamoto, Y. amd Stock, D.W. (2005)

Ontogenetic transition from unicuspid to multicuspid oral dentition in a teleost fish: Astyanax mexicanus, the Mexican tetra (Ostariophysi: Characidae)

Espinasa, L. and Espinasa, M. (2005)

Why do cavefish lose their eyes?

Espinasa, L. and Espinasa, M. (2005)

Why do cave fishes lose their eyes? A Darwinian mystery unfolds in the dark

Hernández, D.A. (2005)

Relaciones evolutivas de las especies del genéro Lucifuga (Ophidiiformes: Bythitidae) en Cuba

Tian, N.M.M.L. and Price, D.J. (2005)

Why cavefish are blind

Panaram, K. and Borowsky, R.L. (2005)

Gene flow and genetic variability in cave and surface populations of the Mexican tetra, Astyanax mexicanus (Teleostei: Characidae)

Franz-Odendaal, T.A. and Hall, B.K. (2006)

Modularity and sense organs in the blind cavefish, Astyanax mexicanus

Plath, M., Rohde, M., Schroder, T., Taebel-Hellwig, A. and Schlupp, I. (2006)

Female mating preferences in blind cave tetras Astyanax fasciatus (Characidae, Teleostei)

Reeves, R.G. and Bermingham, E. (2006)

Colonization, population expansion, and lineage turnover: phylogeography of Mesoamerican characiform fish.

Jeffery, W.R. (2006)

Convergence of pigment regression in cave animals: developmental, biochemical and genetic progress towards understanding evolution of the colourless phenotype

Garrido-Linares, M. and Acero, P.A. (2006)

Peces Ophidiiformes del Atlántico occidental tropical con especial énfasis en el mar Caribe colombiano

Protas, M.E., Hersey, C., Kochanek, D., Zhou, Y., Wilkens, H., Jeffery, W.R., Zon, L.I., Borowsky, R. and Tabin, C.J. (2006)

Genetic analysis of cave fish reveals molecular convergence in the evolution of albinism

Espinasa, L. and Jeffery, W.R. (2006)

Conservation of retinal circadian rhythms during cavefish eye degeneration

Jeffery, W.R. (2006)

Regressive Evolution of Pigmentation in the Cavefish Astyanax

Peleshanko, S, Julian, MD, Ornatska, M, McConney, ME, LeMieux, MC, Chen, NN, Tucker, C, Yang, YC, Liu, C, Humphrey, JAC and Tsukruk, VV (2007)

Hydrogel-encapsulated microfabricated haircells mimicking fish cupula neuromast

Gregson, J.N.S. and Burt de Perera, T. (2007)

Shoaling in eyed and blind morphs of the characin Astyanax fasciatus under light and dark conditions

Strickler, A.G., Yamamoto, Y. and Jeffery, W.R. (2007)

The lens controls cell survival in the retina: Evidence from the blind cavefish Astyanax

Moreira, C.R. (2007)

Relações filogenéticas na ordem Characiformes (Teleostei: Ostariophysi)

Di Palma, F., Kidd, C., Borowsky, R. and Kocher, T.D. (2007)

Construction of bacterial artificial chromosome libraries for the Lake Malawi cichlid (Metriaclima zebra), and the blind cavefish (Astyanax mexicanus)

Wilkens, H (2007)

Regressive evolution: Ontogeny and genetics of cavefish eye rudimentation

Holbrook, R., Bomphrey, R., Walker, S., Taylor, G., Thomas, A. and Burt de Perera, T. (2007)

Swimming performance of a subcarangiform, the blind mexican cave fish (Astyanax fasciatus)

Menuet, A., Alunni, A., Joly, J.S., Jeffery, W.R. and Retaux, S. (2007)

Expanded expression of sonic hedgehog in Asyanax cavefish: multiple consequences on forebrain development and evolution

Romero, A. (2007)

The discovery of the first Cuban blind cave fish: The untold story

Alunni, A., Menuet, A., Candal, E., Penigault, J.B., Jeffery, W.R. and Retaux, S. (2007)

Developmental mechanisms for retinal degeneration in the blind cavefish Astyanax mexicanus

Porter, M.L., Dittmar, K. and Perez-Losada, M. (2007)

How long does evolution of the troglomorphic form take? Estimating divergence times in Astyanax mexicanus

Porter, M.L., Dittmar, K. and Perez-Losada, M (2007)

How long does evolution of the troglomorphic form take? Estimating divergence times in Astyanax mexicanus

Protas, M., Conrad, M., Gross, J.B., Tabin, C. and Borowsky, R.L. (2007)

Regressive evolution in the Mexican cave tetra, Astyanax mexicanus

Kavalco, K.F. and Almeida-Toledo, L.F. (2007)

Molecular cytogenetics of blind Mexican tetra and comments on the karyotypic characteristics of genus Astyanax (Teleostei, Characidae)

Strickler, A.G., Byerly, M.S. and Jeffery, W.R. (2007)

Lens gene expression analysis reveals downregulation of the anti-apoptotic chaperone alphaA-crystallin during cavefish eye degeneration

Windsor, S.P. (2008)

Hydrodynamic imaging by blind Mexican cavefish

Strecker, U. (2008)

Introgression in Astyanax fasciatus cave populations

Espinasa, M. and Espinasa, L. (2008)

Losing sight of regressive evolution

Salin, K., Voituron, Y., Colson, C. and Hervant, F. (2008)

To colonise subterranean environments without starvation tolerance capacity: the case of fish Astyanax mexicanus

Moreira, C.R. and Trajano, E. (2008)

Stygichthys typhlops Brittan and Bohlke, 1965

Borowsky, R.L. (2008)

Restoring sight in blind cavefish

Windsor, S., Mallinson, G. and Montgomery, J. (2008)

Hydrodynamic imaging by blind Mexican cave fish (Astyanax fasciatus)

Borowsky, R.L. (2008)

Are cave populations evolutionary dead ends?

Windsor, S., Tan, D. and Montgomery, J. (2008)

Swimming kinematics and hydrodynamic imaging in the blind Mexican cave fish (Astyanax fasciatus)

Borowsky, R.L. (2008)

Determining the sex of adult Astyanax mexicanus

Borowsky, R.L. (2008)

Breeding Astyanax mexicanus through natural spawning

Wilkens, H. (2008)

Genes, modules and the evolution of troglobites

Borowsky, R.L. (2008)

In vitro fertilisation of Astyanax mexicanus

Borowsky, R.L. (2008)

Handling Astyanax mexicanus eggs and fry

Yoshizawa, M. and Jeffery, W.R. (2008)

Shadow response in the blind cavefish Astyanax reveals conservation of a functional pineal eye

Borowsky, R. (2008)

Astyanax mexicanus, the blind Mexican cave fish: a model for studies in development and morphology

Holbrook, R., Bomphrey, R., Walker, S., Taylor, G., Thomas, A. and Burt de Perera, T. (2008)

A comparative analysis of the normal swimming performance of two subcarangiforms, blind Mexican cave fish (Astyanax fasciatus) and goldfish (Carassius auratus)

Holbrook, R.I. and Burt de Perera, T. (2008)

Three-dimensional orientation in fish

Aw, J.M., Holbrook, R.I., Burt de Perera, T. and Kacelnik, A. (2008)

Apparent irrationality and state-dependant learning in fish

Retaux, S, Pottin, K and Alunni, A (2008)

Shh and forebrain evolution in the blind cavefish Astyanax mexicanus

Jeffery, W.R. (2008)

Developmental relationships between eye regression and constructive traits in Astyanax cavefish

Yong, E. (2008)

Blind fish see shadows

Jeffery, W.R. (2008)

Emerging model systems in evo-devo: cavefish and microevolution of development

Protas, M., Tabansky, I., Conrad, M., Gross, J.B., Vidal, O., Tabin, C. and Borowsky, R.L. (2008)

Multi-trait evolution in a cave fish, Astyanax mexicanus

Ornelas-Garcia, C.P., Dominguez-Dominguez, O. and Doadrio, I. (2008)

Evolutionary history of the fish genus Astyanax Baird and Girard (1854) (Actinopterygii, Characidae) in Mesoamerica reveals multiple morphological homoplasies

Gross, J.B., Protas, M., Conrad, M., Scheid, P.E., Vidal, O., Jeffery, W.R., Tabin, C. and others (2008)

Synteny and candidate gene prediction using an anchored linkage map of Astyanax mexicanus

Strickler, A.G. and Jeffery, W.R. (2009)

Differentially expressed genes identified by cross-species microarray in the blind cavefish Astyanax

Franz-Odendaal, T., Varatharasan, N. and Croll, R.P. (2009)

The development of taste buds in two morphs of Astyanax mexicanus

Espinasa, L. and Giribet, G. (2009)

Living in the dark—species delimitation based on combined molecular and morphological evidence in the nicoletiid genus Texoreddellia Wygodzinsky, 1973 (Hexapoda: Zygentoma: Nicoletiidae) in Texas and México

Esquivel Bobadilla, S., Borowsky, R.L., Espinosa Perez, H. and Garcia de Leon, F.J. (2009)

Microsatellite polymorphisms of Astyanax mexicanus at Mexican Atlantic slope

Dufton, M. and Franz-Odendaal, T.A. (2009)

Sensory structures and developmental modules within Astyanax

Yamamoto, Y., Byerly, M.S., Jackman, W.R. and Jeffery, W.R. (2009)

Pleiotropic functions of embryonic sonic hedgehog expression link jaw and tastebud amplification with eye loss during cavefish evolution

Varatharasan, N., Croll, R. and Franz-Odendaal, T. (2009)

Taste bud development and patterning in sighted and blind morphs of Astyanax mexicanus.

Zhao, Y.H. and Zhang, C.G. (2009)

Endemic fishes of Sinocyclocheilus (Cypriniformes: Cyprinidae) in China - Species diversity, cave adaptation, systematics and zoogeography

Ren, W.Y. and Yamamoto, Y. (2009)

How cavefish lost their eyes. Midline signalling and eye development

Guibal, C., Yamamoto, Y., Reynoso, V.H. and Whitmore, D. (2009)

Biological clocks in Astyanax mexicanus

De Carvalho, P.A., Paschoalini, A.L., Santos, G.B., Rizzo, E. and Bazzoli, N. (2009)

Reproductive biology of Astyanax fasciatus (Pisces: Characiformes) in a reservoir in southeastern Brazil.

Whitmore, D., Guibal, C., Tamai, K. and Yamamoto, Y. (2009)

Circadian clocks and light sensitivity in Astyanax cell lines

Romero, A., Zhao, Y.H. and Chen, X.Y. (2009)

The hypogean fishes of China

Borowsky, R.L. (2009)

Emerging model organisms Astyanax mexicanus, the blind Mexican cave fish: A model for studies in development and morphology

McHenry, M., Feitl, K. and Cardenas, G. (2009)

Do blind Astyanax have highly sensitive lateral line receptors?

Windsor, S. (2009)

Hydrodynamic imaging in blind Mexican cave fish

Patton, P., Coombs, S. and Windsor, S. (2009)

Active wall following in the Mexican blind cavefish (Astyanax sp.)

Ornelas-Garcia, C.P., Dominguez-Dominguez, O. and Doadrio, I. (2009)

Phylogeny and biogeography of the genus Astyanax in Mesoamerica

Zhao, Y.H. and Zhang, C.G. (2009)

Endemic fishes of Sinocyclocheilus (Cypriniformes: Cyprinidae) in China - Species diversity, cave adaptation, systematics and zoogeography

Yoshizawa, M., Soares, D., Goricki, S., Ashida, G. and Jeffery, W.R. (2009)

Evolution of adaptive behaviours in the cavefish Astyanax

Jeffery, W.R. (2009)

Regresive evolution in Astyanax cavefish

Romero, A., Zhao, Y.H. and Chen, X.Y. (2009)

The hypogean fishes of China

Gross, J.B., Borowsky, R. and Tabin, C. (2009)

A novel role for Mc1r in the parallel evolution of depigmentation in independant populations of the cavefish Astyanax mexicanus

Sutherland, L., Holbrook, R.I. and Burt de Perera, T. (2009)

Sensory system affects orientational strategy in a short-range spatial task in blind and eyed morphs of the fish, Astyanax fasciatus

Pottin, K and Retaux, S (2009)

Interactions between signalling centres for anterior neural plate patterning in Astyanax

Sharma, S., Coombs, S., Patton, P. and Burt de Perera, T. (2009)

The function of wall-following behaviours in the Mexican blind cavefish and a sighted relative, the Mexican tetra (Astyanax)

Aw, J.M., Holbrook, R.I., Burt de Perera, T. and Kacelnik, A. (2009)

State-dependant valuation learning in fish: Banded tetras prefer stimuli associated with greater past deprivation

Retaux, S., Alunni, A., Menuet, A. and Pottin, K. (2009)

Why do cavefish first develop eyes? A forebrain deveopment hypothesis

McConney, M.E., Chen, N.N., Lu, D., Hu, H., Coombs, S., Liu, C. and Tsukruk, V.V. (2009)

Biologically inspired design of hydrogel-capped hair sensors for enhanced underwater flow detection

Holbrook, R. and Burt de Perera, T. (2009)

Spatial orientation of two morphs of Astyanax fasciatus

Albertson, R.C., Cresko, W., Detrich, H.W. and Postlethwait, J.H. (2009)

Evolutionary mutant models for human disease

Jeffery, W.R. (2009)

AIM 2009: The first international Astyanax meeting

Coombs, S. and Patton, P. (2009)

Short-range, sensorimotor adaptations for aquiring spatial knowledge

Holbrook, R. and Burt de Perera, T. (2009)

Separate encoding of vertical and horizontal components of space during orientation in fish

Maher, B. (2009)

Evolution: biology's next top model

Porter, M.L., Jeffery, W.R. and Dittmar, K. (2009)

Estimating divergence times in Astyanax mexicanus

Streets, A and Soares, D (2009)

Changes in sensory strategies during development of cavefish

Jeffery, W.R. (2009)

Evolution of eye degeneration in cavefish

Reynoso, V.H., Paredes-Leon, R. and Arroyo Lambaer, D. (2009)

Conservation isues in the blind cave fishes of the genus Astyanax in northeastern Mexico

Leclercq, E., Taylor, J.F. and Migaud, H. (2009)

Morphological skin colour changes in teleosts

Jeffery, W.R. (2009)

Evolution and development in the cavefish Astyanax

Culver, D.C. and Pipan, T. (2009)

The biology of caves and other subterranean habitats

Kowalko, J., Gross, J.B., Protas, M., Borowsky, R.L. and Tabin, C. (2009)

Genetic approaches to studying morphological and behavioural traits in Astyanax mexicanus

Jeffery, W.R. and Strickler, A.G. (2010)

Development as an evolutionary process in Astyanax cavefish

Pottin, K., Hyacinthe, C., and Retaux, S. (2010)

Conservation, development, and function of a cement gland-like structure in the fish Astyanax mexicanus

Juan, C., Guzik, M.T., Jaume, D. and Cooper, S.J.B. (2010)

Evolution in caves: Darwin’s ‘wrecks of ancient life’ in the molecular era

Coombs. S. (2010)

Active flow-sensing for spatial exploration and navigation

Salin, K., Voituron, Y., Mourin, J. and Hervant, F. (2010)

Cave colonization without fasting capacities: an example with the fish Astyanax fasciatus mexicanus

Moreira, C.R., Bichuette, M.E., Oyakawa, O.T., de Pinna, M.C.C. and Trajano, E. (2010)

Rediscovery and redescription of the unusual subterranean characiform Stygichthys typhlops, with notes on its life history

Mirande, J.M. (2010)

Phylogeny of the family Characidae (Teleostei: Characiformes): from characters to taxonomy

Van Trump, W.J., Coombs, S., Duncan, K. and McHenry, M. (2010)

Gentamicin disrupts both receptor classes in the lateral line system

Jeffery, W.R. (2010)

Pleiotropic tradeoffs between constructive and regressive traits during troglomorphic evolution

Patton, P., Windsor, S. and Coombs, S. (2010)

Active wall following by Mexican blind cavefish (Astyanax mexicanus)

Windsor, S.P., Norris, S.E., Cameron, S.M., Mallinson, G.D. and Montgomery, J.C. (2010)

The flow fields involved in hydrodynamic imaging by blind Mexican cave fish (Astyanax fasciatus). Part II: gliding parallel to a wall.

Wilkens, H (2010)

Genes, modules and the evolution of cave fish

Windsor, S.P., Norris, S.E., Cameron, S.M., Mallinson, G.D. and Montgomery, J.C. (2010)

The flow fields involved in hydrodynamic imaging by blind Mexican cave fish (Astyanax fasciatus). Part I: open water and heading towards a wall.

Yoshizawa, M., Goricki, S., Soares, D. and Jeffery, W.R. (2010)

Evolution of a behavioural shift mediated by superficial neuromasts helps cavefish find food in darkness

Gross, J.B. and Tabin, C.J. (2010)

Evolutionary genetics of pigmentation loss

Van Trump, W.J., Coombs, S., Duncan, K. and McHenry, M.J. (2010)

Gentamicin is ototoxic to all hair cells in the fish lateral line system

Taylor, G.K., Holbrook, R. and Burt de Perera, T. (2010)

Fractional rate of change of swim-bladder volume is reliably related to absolute depth during vertical displacements in teleost fish

Jeffery, W.R. (2010)

Pleiotropy and eye degeneration in cavefish

Kowalko, J., Rohner, N., Borowsky, R.L. and Tabin, C. (2011)

Cave fish as a model to elucidate the genetic basis of the evolution of behaviour

Kish, P.E., Bohnsack, B.L., Gallina, D., Kasprick, D.S. and Kahana, A. (2011)

The eye as an organizer of craniofacial development

Bradic, M., Beerli, P. and Borowsky, R.L. (2011)

Population genetic evidence for convergance and parallelism in the Mexican blind cavefish (Astyanax mexicanus)

Strickler, A.G. and Soares, D. (2011)

Comparative genetics of the central nervous system in epidean and hypogean Astyanax mexicanus

Esquivel-Bobadilla, S (2011)

Análisis genético de Astyanax mexicanus (Characidae, Teleostei, Pisces) de la vertiente atlántica de México usando microsatélites.

Garcia-Machado, E., Hernandez, D., Moller, P.R., Bernatchez, L. and Casane, D. (2011)

Phylogenetic relationships among Cuban and Bahamian species of the blind cave-fishes genus Lucifuga: A shared lineage among two isoloated archipelagoes

Elipot, Y., Callebert, J., Hinaux, H. and Retaux, S. (2011)

Linking evolution of the aggressive behaviour and the serotogenic system in Astyanax mexicanus surface fish and blind cavefish populations

Schobert, C.S., Stiassny, M.L.J., Jeffery, W.D. and Dubielzig, R.R. (2011)

Comparative ocular anatomy In troglomorphic fish: Sensory compensation for reduced vision

Pottin, K., Hinaux, H., Elipot, Y., Chaloub, H., Pere, S. and Retaux, S. (2011)

A developmental staging table for Astyanax mexicanus

Hinaux, H., Pottin, K., Chalhoub, H., Pere, S., Elipot, Y., Legendre, L. and Retaux, S. (2011)

A developmental staging table for Astyanax mexicanus surface fish and Pachon cavefish

Hausdorf, B., Wilkens, H. and Strecker, U. (2011)

Population genetic patterns revealed by microsatellite data challemge the mitochondrial DNA based taxonomy of Astyanax in Mexico (Characidae, Teleostei)

Salin, K., Voituron, Y., Mourin, J. and Hervant, F. (2011)

Cave colonisation without fasting capacities: An example with the fish Astyanax fasciatus mexicanus

Zhao, Y.H., Gozlan, R.E. and Zhang, C.G. (2011)

Out of sight out of mind: current knowledge of Chinese cave fishes

Ornelas-Garcia, C.P., Pedraza-Lara, C.P., Bastir, M. and Doadrio, I. (2011)

Parallel adaptive divergence in a characid fish genus Asyanax Baird and Girard (1854) from Catemaco Lake (Mexico)

Gallo, N.D. and Jeffery, W.R. (2011)

Variance of space dependant growth in Astyanax mexicanus

Duboue, E.R. and Borowsky, R.L. (2011)

Evolutionary convergence on sleep loss in cavefish populations

Windsor, S., Paris, J. and Burt de Perera, T. (2011)

No role for direct touch using the pectoral fins, as an information gathering strategy in blind fish

Zhao, Y.H., Gozlan, R.E. and Zhang, C.G. (2011)

Out of sight out of mind: current knowledge of Chinese cave fishes

Kasumyan, A.O. (2011)

Tactile reception and behavior of fish

Duboue, E.R., Keene, A. and Borowsky, R. (2011)

Evolutionary convergence on sleep loss in cavefish populations

Yoshizawa M. and Jeffery, W.R. (2011)

Evolutionary tuning of an adaptive behavior requires enhancement of the neuromast sensory system

Vazquez-Echeverria, C., Guibal, C., Reynoso, V.H., Carrillo-Rosas, S., Ramos-Balderas, J.L. and Maldonado, E. (2011)

Cloning ear development related genes in Astyanax mexicanus

Yoshizawa, M. and Jeffery, W.R. (2011)

Evolution of a behaviour mediated by the lateral line system adapts Astyanax to life in darkness

Legendre, L., Elipot, Y., Hinaux, H., Pere, S., Sohm, F. and Retaux, S. (2011)

I-Scel mediated transgenesis in Astyanax model

Hinaux, H., Fartman, B., DaSilva, C., Noirot, C. and Jeffery, W.R. (2011)

Astyanax mexicanus cavefish and surface fish cDNA libraries

Yamamoto, Y. and Jeffery, W.R. (2011)

Blind cavefish

Hinaux, H and Retaux, S (2011)

Placode development in Astyanax mexicanus blind cavefish and sighted surface fish

Gatenby, R.A., Gillies, R.J. and Brown, J.S. (2011)

Of cancer and cave fish

Jeffery, W.R. and Bilandzija, H. (2011)

Convergent evolution of albinism in cave animals: A defect in the first step of melanin biosynthesis in troglomorphic fishes and insects

Garcia-Machado, E., Hernandez, D., Garcia-Debras, A., Chevalier-Monteagudo, P., Metcalfe, C., Bernatchez, L. and Casane, D. (2011)

Molecular phylogeny and phylogeography of the Cuban cave-fishes of the genus Lucifuga: Evidence for cryptic allopatric diversity

Retaux, S, Pottin, K and Hyacinthe, C (2011)

The nature and function of the Astyanax casquette

Espinasa, L. (2011)

Promoting undergraduate research in large classrooms: Guerrero cave Astyanax - Old or young colonisation?

Retaux, S (2011)

Projection of a movie promoting Astyanax as a model system

Tan, D., Patton, P. and Coombs, S. (2011)

Do blind cavefish have behavioural specializations for active flow-sensing?

Lechner, W. and Ladich, F. (2011)

How do albino fish hear?

Holbrook, R. and Burt de Perera, T. (2011)

Three-dimensional spatial cognition: information in the vertical dimension overrides information from the horizontal

Pottin, K., Hinaux, H. and Retaux, S. (2011)

Restoring eye size in Astyanax mexicanus blind cavefish embryos through modulation of the Shh and Fgf8 forebrain organising centres

Holbrook, R. and Burt de Perera, T. (2011)

Fish navigation in the vertical dimesion: can fish use hydrostatic pressure to determine depth?

Oliveira, C., Avelino, G.S., Abe, K.T., Mariguela, T.C., Benine, R.C., Orti, G., Vari, R.P. and Correa e Castro, R.M. (2011)

Phylogenetic relationships within the speciose family Characidae (Teleostei: Ostariophysi: Characiformes) based on multilocus analysis and extensive ingroup sampling

Ma, L and Jeffery, WR (2011)

The function of alphaA-Crystallin in lens degeneration in Astyanax mexicanus cavefish

Cavallari, N., Frigato, E., Vallone, D., Froehlich, N., Lopez-Olmeda, J.F., Foa, A., Berti, R., Sanchez-Vazquez, F.J., Bertolucci, C. and Foulkes, N.S. (2011)

A blind circadian clock in cavefish reveals that opsins mediate peripheral clock photoreception

Wilkens, H. (2011)

Variability and loss of functionless traits in cave animals. Reply to Jeffery (2010)

Hoke, K., Schwartz, A. and Soares, D. (2012)

Evolution of the fast start response in the cavefish Astyanax mexicanus

Dufton, M., Hall, B.K. and Franz-Odendaal, T. (2012)

Early lens ablation causes dramatic long-term effects on the shape of bones in the craniofacial skeleton of Astyanax mexicanus

Huppop, K. (2012)

Adaptation to low food

Gross, J.B. (2012)

The complex origin of Astyanax cavefish

Bradic, M., Beerli, P., Garcia-de Leon, F.J., Esquivel-Bobadilla, S. and Borowsky, R.L. (2012)

Gene flow and population structure in the Mexican blind cavefish complex (Astyanax mexicanus)

Mogdans, J. and Bleckmann, H. (2012)

Coping with flow: behavior, neurophysiology and modeling of the fish lateral line system

Strecker, U., Hausdorf, B. and Wilkens, H. (2012)

Parallel speciation in Astyanax cave fish (Teleostei) in Northern Mexico

Hervant, F. (2012)

Starvation in subterranean species versus surface-dwelling species: Crustaceans, Fish, and Salamanders

Yoshizawa, M., Yamamoto, Y., O'Quin, K.E. and Jeffery, W.R. (2012)

Evolution of an adaptive behavior and its sensory receptors promotes eye regression in blind cavefish

Gallo, N.D. and Jeffery, W.R. (2012)

Evolution of space dependent growth in the teleost Astyanax mexicanus

Franck, D (2012)

Curt Kosswig. Ein Forscherleben zwischen Bosporus und Elbe

Wilkens, H. (2012)

Neutral mutations

Gross, J. B. and Wilkens, H. (2012)

Evolution of albinism in a captive population of cavefish

Yoshizawa, M., Ashida, G. and Jeffery, W.R. (2012)

Parental genetic effects in a cavefish adaptive behavior explain disparity between nuclear and mitochondrial DNA

Trontelj, P. (2012)

Natural selection

Duboue, E.R., Borowsky, R.L. and Keene, A.C. (2012)

Beta-adrenergic signaling regulates evolutionarily derived sleep loss in the Mexican cavefish

Duboue, E.R. and Borowsky, R. (2012)

Altered rest-activity patterns evolve via circadian independent mechanisms in cave adapted balitorid loaches

Idda, M.L., Bertolucci, C., Vallone, D., Gothilf, Y., Sánchez-Vázquez, F.J. and Foulkes N.S. (2012)

Circadian clocks: lessons from fish

Jeffery, W.R. (2012)

Astyanax mexicanus: A model organism for evolution and adaptation

Porter, M.L., Blasic, J.R., Bok, M.J., Cameron, E.G., Pringle, T., Cronin, T.W. and Robinson, P.R. (2012)

Shedding new light on opsin evolution

Pipan, T. and Culver, D.C. (2012)

Convergence and divergence in the subterranean realm: a reassessment.

Protas, M. and Jeffery, W.R. (2012)

Evolution and development in cave animals: from fish to crustaceans

Gross, J.B., Furterer, A., Carlson, B.M. and Stahl, B.A. (2013)

An integrated transcriptome-wide analysis of cave and surface dwelling Astyanax mexicanus

Rodrigues, F.R. (2013)

Comparison of brain and cranial nerve morphology between eyed surface fish and blind cave fish of the species Astyanax mexicanus.

Ma, L. and Jeffery, W. (2013)

Role of aA-crystallin in Asyanax cavefish eye degeneration

Stahl, B.A. and Gross, J.B. (2013)

Pigmentation loss in cave animals: A high-resolution study of destructive genetic mutations

Kowalko, J.E., Rohner, N., Rompani, S.B., Peterson, B.K., Linden, T.A., Yoshizawa, M., Kay, E.H., Weber, J., Hoekstra, H.E., Jeffery, W.R., Borowsky, R. and Tabin, C.J. (2013)

Loss of schooling behavior in cavefish through sight-dependent and sight-independent mechanisms

Jeffery, W., Doshi, P., Yoshizawa, M. and O’Quin, K.E. (2013)

Development and genetics of the Astyanax sclera: An optic tissue organised by the lens

OʼQuin, K.E., Yoshizawa, M., Doshi, P. and Jeffery, W.R. (2013)

Quantitative genetic analysis of retinal degeneration in the blind cavefish A. mexicanus

Stahl, A.L., Stahl, B.A., Buschbeck, E. and Gross, J.B. (2013)

An evaluation of eyelessness in cave dwelling Astyanax mexicanus using RNA-seq technology

Rohner, N., Jarosz, D.F., Kowalko, J.E., Yoshizawa, M., Jeffery, W.R., Borowsky, R.L., Lindquist, S. and Tabin, C.J. (2013)

Cryptic variation in morphological evolution: HSP90 as a capacitor for loss of eyes in cavefish

Atukorala, A.D.S., Hammer, C., Dufton, M. and Franz-Odendaal, T.A. (2013)

Adaptive evolution of the lower jaw dentition in Mexican tetra (Astyanax mexicanus)

Blin, M., Bibliowicz, Y. and Rétaux, S. (2013)

Development of the olfactory system in Astyanax cavefish and surface fish

Joachim, B.L., Riesch R., and Jeffery, W.R., and Schlupp, I. (2013)

Pignent cell retention in cavernicolous populations of Poecilia mexicana (Poeciliidae)

Rohner, N., Jarosz, D.F., Taipale, M., Kowalko, J., Yoshizawa, M., Jeffery, W.R., Borowsky, R.L., Lindquist, S. and Tabin, C.J. (2013)

HSP90 as a capacitor for the evolution of eye loss in fish

Bibliowicz, J., Elipot, Y., Blin, M. and Rétaux, S. (2013)

Olfactory evolution in cave-dwelling Astyanax mexicanus

Kowalko, J., Rohner, N., Linden, T.A., Rompani S.B., Warren, W.C., Borowsky, R., Tabin, C.J., Jeffery, W.R. and Yoshizawa M. (2013)

Convergence in feeding posture occurs through different loci in independently evolved cave populations of Astyanax mexicanus.

Bradic, M., Teotonio, H. and Borowsky, R.L. (2013)

The population genomics of repeated evolution in the blind cavefish Astyanax mexicanus

Beale, A., Guibal, C., Tamai, T.K., Klotz, L., Cowen, S., Peyric, E., Reynoso, V.H., Yamamoto, Y. and Whitmore, D. (2013)

Circadian rhythms in Mexican blind cavefish Astyanax mexicanus in the lab and in the field

Bobadilla, S.E., García de León, F.J. and Borowsky, R. (2013)

Genetic structure of Astyanax mexicanus at Mexican Atlantic slope

Beale, A. (2013)

The circadian clock of the Mexican blind cavefish, Astyanax mexicanus

Borowsky, R. (2013)

Eye regression in blind Astyanax cavefish may facilitate the evolution of an adaptive behavior and its sensory receptors

Gunter, H. and Meyer, A. (2013)

Trade-offs in cavefish sensory capacity

Vazquez, A.O.S., Bárcenas-Luna, R. and Arellano-Carbajal, F. (2013)

Comparative phylogenies of monogenean parasites and their host Astyanax mexicanus

Stemmer, M., Schuhmacher, L.-N., Foulkes, N.S., Bertolucci, C. and Wittbrodt, J. (2013)

Unravelling continuous eye growth in teleosts by studying blind cavefish

Garcia-Gonzalez, O.M. and Arellano-Carbajal, F. (2013)

Isolation and characterization of V1r pheromone receptor gene in cave and surface variants of Astyanax mexicanus

Gross, J. B., Krutzler, A.J. and Espinasa, L. (2013)

An analysis of structural mutations in the gene Mc1r in surface and Granadas cave-dwelling Astanax aeneus

Lan, J.H., Gan, X., Wu, T.J. and Yang, J. (2013)

Cave fishes of Guangxi, China

Elipot, Y., Hinaux, H., Callebert, J. and Retaux, S. (2013)

Evolutionary shift from fighting to foraging in blind cavefish through changes in the serotonin network

Gross, J.B., Krutzler, A.J. and Bruns, L.E. (2013)

Genetic analysis of dermal bone fragmentation in a natural model system

Gross, J. B. and Matthews, M (2013)

An analysis of gene expression level changes across development in surface and cave dwelling fish

Wall, A. and Volkoff, H. (2013)

Effects of fasting and feeding on the brain mRNA expressions of orexin, tyrosine hydroxylase (TH), PYY and CCK in the Mexican blind cavefish (Astyanax fasciatus mexicanus)

Friedrich, M. (2013)

Biological Clocks and Visual Systems in Cave-Adapted Animals at the Dawn of Speleogenomics

Hinaux, H., Poulain, J., Da Silva, C., Noirot, C., Jeffery, W.R., Casane, D. and Rétaux, S. (2013)

Transcriptome analysis in Astyanax mexicanus blind cavefish and sighted surface fish

Bibliowicz, J., Alie, A., Espinasa, L., Yoshizawa, M., Blin, M., Hinaux, H., Legendre, L., Pere, S. and Retaux, S. (2013)

Differences in chemosensory response between eyed and eyeless Astyanax mexicanus of the Rio Subterraneo cave

Keene, A. (2013)

Metabolic regulation of sleep in A. mexicanus

Van Trump, W.J. and McHenry, M.J. (2013)

The lateral line system is not necessary for rheotaxis in the Mexican blind avefish (Astyanax fasciatus)

Gan, X., Wu, T.J., Wei, M.L. and Yang, J. (2013)

A new blind barbine species, Sinocyclocheilus anshuiensis sp. nov. (Cypriniformes: Cyprinidae) from Guangxi, China

Pazza, R., Bertollo, L.A.C., de Almeida-Toledo, L.F. and Kavalco, K.F. (2013)

Molecular systematics of the genus Astyanax - Starter edition

Krutzler, A.J., Bruns, L.E. and Gross, J.B. (2013)

Fragmentation, fussion and asymmetry in the craniofacial skeleton of Astyanax mexicanus

Legendre, L., Elipot, Y., Hinaux, H., Pere, S., Sohm, F. and Retaux, S. (2013)

Transgenesis methods in Astyanax

Borowsky, R. and Cohen, D. (2013)

Genomic consequences of ecological speciation in Astyanax cavefish

Pennisi, E. (2013)

Cavefish study supports controversial evolutionary mechanism

Gross, J.B. and Wilkens, H. (2013)

Albinism in phylogenetically and geographically distinct populations of Astyanax cavefish arises through the same loss-of-function Oca2 allele

O'Quin, K.E., Yoshizawa, M., Doshi, P. and Jeffery, W R. (2013)

Quantitative genetic analysis of retinal degeneration in the blind cavefish Astyanax mexicanus

Borowsky, R.L. (2013)

Evolution of an adaptive behaviour and its sensory receptors facilitates eye regression in blind cavefish

Yoshizawa, M., O'Quin, K.E. and Jeffery, W.R. (2013)

Evolution of an adaptive behavior and its sensory receptors promotes eye regression in blind cavefish: response to Borowsky (2013)

Furterer, A., Carlson, B.M., Stahl, B.A. and Gross, J.B. (2013)

An intergrated transcriptone-wide analysisn of cave and surface dwelling Astyanax mexicanus

Yoshizawa, M., O'Quin, K.E., Ashida, G. and Jeffery, W.R. (2013)

Adaptive changes in vibration attraction behaviour and its sensory receptors promote eye degeneration and disparity between the nuclear and mitochondrial genomes in Pachon cavefish

Yoshizawa, M., O’Quin, K.E., and Jeffery, W.R. (2013)

QTL clustering as a mechanism for rapid multi-trait evolution

Rétaux, S., Bourrat, F., Joly, J.-S. and Hinaux, H., (2013)

Perspectives in evo-devo of the vertebrate brain

Hinaux, H., Poulain, J., Da Silva, C., Noirot, C., Jeffery, W. R., Casane, D. and Retaux, S. (2013)

De novo sequencing of Astyanax mexicanus surface fish and Pachon cavefish transcriptomes reveals enrichment of mutations in cavefish putative eye genes

Kowalko, J.E., Rohner, N., Rompani, S.B., Peterson, B.K., Linden, T.A., Yoshizawa, M., Kay, E.H., Weber, J., Hoekstra, H.E., Jeffery, W.R., Borowsky, R. and Tabin, C.J.. (2013)

Genetic analysis of the loss of schooling behavior in cavefish reveals both sight-dependent and independent mechanisms.

Bilandzija, H., Ma, L., Parkhurst, A. and Jeffery, W.R. (2013)

A potential benefit of albinism in Astyanax cavefish: Downregulation of the oca2 gene increases Tyrosine and catecholamine levels as an alternative to melanin synthesis

Espinasa, L. (2013)

Pardigm shifts and pendulum swings regarding the origin of Astyanax cavefish: What about geology?

Espinasa, L. and Jeffery, W. (2013)

Caballo Moro breaks Dollo's law: Recuperation of vision in a blind cavefish population

Retaux, S. and Casane, D. (2013)

Evolution of eye development in the darkness of caves: adaptation, drift, or both?

Borowsky, R. (2013)

Divergence and speciation in Astyanax of the Sierra de El Abra

Elliott, W.R. (2013)

Astyanax: Looking back 45 years

Retaux, S., Elipot, Y., Prunier, L. Hinaux, H. and Blin, M. (2013)

Feed or fight: Delelopmental origin of a behavioural shift in blind cavefish

Retaux, S. and Elipot, Y. (2013)

Feed or fight: A behavioral shift in blind cavefish

Ma, L., Parkhurst, A. and Jeffery, W.R. (2014)

The role of a lens survival pathway including sox2 and [alpha]A-crystallin in the evolution of cavefish eye degeneration

Atukorallaya, D. and Franz-Odendaal, T. (2014)

Astyanax mexicanus-A novel model of tooth shape formation and regeneration

Atukorala, A.D.S. and Franz-Odendaal, T.A. (2014)

Spatial and temporal events in tooth development of Astyanax mexicanus

Coghill, L.M., Hulsey, C.D., Chaves-Campos, J., de Leon, F.J.G. and Johnson, S.G. (2014)

Next generation phylogeography of cave and surface Astyanax mexicanus

Soares, D. Niemiller, M.L. and Higgs, D. (2014)

Review article. Hearing and acoustic communication in cavefishes

Schartl, M. (2014)

Beyond the zebrafish: Diverse fish species for modeling human disease.

Elipot, Y., Hinaux, H., Callebert, J., Launay, J.-M., Blin, M. and Retaux, S. (2014)

A mutation in the enzyme monoamine oxidase explains part of the Astyanax cavefish behavioural syndrome

Trajano, E. and Moreira, C.R. (2014)

Stygichthys typhlops Brittan and Bohlke, 1965 (Teleostei: Characiformes), a phreatobic fish from eastern Brazil: Comments on Sampaio et al. (2012)

Penney, C.C. and Volkoff, H. (2014)

Peripheral injections of cholecystokinin, apelin, ghrelin and orexin in cavefish (Astyanax fasciatus mexicanus): Effects on feeding and on the brain expression levels of tyrosine hydroxylase, mechanistic target of rapamycin and appetite-related hormones

Windsor, S.P. (2014)

Hydrodynamic imaging by blind Mexican cavefish

Moran, D., Softley, R. and Warrant, E.J. (2014)

Eyeless Mexican cavefish save energy by eliminating the circadian rhythm in metabolism

Elipot, Y., Legendre, L., Pere, S., Sohm, F. and Retaux, S. (2014)

Astyanax transgenesis and husbandry: How cavefish enters the laboratory

Espinasa, L., Bartolo, N.D. and Newkirk, C.E. (2014)

DNA sequences of troglobitic nicoletiid insects supports Sierra de El Abra and the Sierra de Guatemala as a single biogeographic area: Implications for Astyanax

McGaugh, S.E., Gross, J.B., Aken, B., Blin, M., Borowsky, R., Chalopin, D., Hinaux, H., Jeffery, W.R., Keene, A., Ma, L., Minx, P., Murphy, D., O'Quin, K.E., Retaux, S., Rohner, N., Searl, S.M., Stahl, B.A., Tabin, C., Volff, J.N., Yoshizawa M, Warren WC. (2014)

The cavefish genome reveals candidate genes for eye loss

Yoshizawa, M., Jeffery, W.R., van Netten, S.M. and McHenry, M.J. (2014)

The sensitivity of lateral line receptors and their role in the behavior of Mexican blind cavefish (Astyanax mexicanus)

Gross, J.B., Krutzler, A.J. and Carlson, B.M. (2014)

Complex craniofacial changes in blind cave-dwelling fish are mediated by genetically symmetric and asymmeric loci

Montgomery, J., Bleckmann, H. and Coombs, S. (2014)

Sensory ecology and neuroethology of the lateral line

Coombs, S., Bleckmann, H., Fay, R.R. and Popper, A.N. (2014)

The Lateral Line System

Espinasa, L., Bibliowicz, J., Jeffery, W. R. and Retaux, S. (2014)

Enhanced prey capture skills in Astyanax cavefish larvae are independent from eye loss

Holzman, R., Perkol-Finkel, S. and Zilman, G. (2014)

Mexican blind cavefish use mouth suction to detect obstacles

Bleckmann, H., Mogdans, J. and Coombs, S.L. (2014)

Flow sensing in air and water. Behavioral, neural and engineering principles of operation

Elliott, W.R. (2014)

Sotano de Yerbaniz

Espinasa, L., Centone, D.M. and Gross, J.B. (2014)

A contemporary analysis of a loss-of-function oculocutaneous albinism type II (Oca2) allele within the Rio Subterraneo Astyanax cavefish population

Palacios-Vargas, J.G., Juberthie, C. and Reddell, J. (2014-2015)

Encyclopaedia Biospeologica Mexico

O’Quin, K.E., Doshi, P., Lyon, A., Hoenemeyer, E., Yoshizawa, M. and Jeffery, W,R. (2015)

Complex evolutionary and genetic patterns characterize the loss of scleral ossification in the Blind cavefish, Astyanax mexicanus

Stahl, B.A. and Gross, J.B. (2015)

Alterations in Mc1r gene expression are associated with regressive pigmentation in Astyanax cavefish

Ma, L., Jeffery, W.R., Essner, J.J. and Kowalko, J.E. (2015)

Genome editing using TALENs in blind Mexican cavefish, Astyanax mexicanus

Stahl, B.A., Ma, L. and Gross, J.B. (2015)

High resolution genomic mapping reveals genes contributing to complex melaophore variation in Astyanax mexicanus cavefish

Ma, L. and Jeffery, W.R. (2015)

Molecular analysis of an A. mexicanus eye QTL reveals a potential role of Cystathionine B-synthase A in cavefish eye degeration

Caballero-Hernandez, O., Hernandez-Patricio, M., Sigala-Regalado, I., Morales-Malacara, J.B. and Miranda-Anaya, M. (2015)

Circadian rhythms and photic entrainment of swimming activity in cave-dwelling fish Astyanax mexicanus (Actinopterygii: Characidae), from El Sotano La Tinaja, San Luis Potosi, Mexico

Dufton, M. and Franz-Odendaal, T.A. (2015)

Morphological diversity in the orbital bones of two teleosts with experimental and natural variation in eye size

Bradic, M, Rohner, N, Tabin, C and Borowsky, R. (2015)

Caves with eyed and eyeless populations of Astyanax

Hammer, C., Atukorala, A.D.S. and Franz‐Odendaal, T. (2015)

Dentition influences shape of oral jaws in fish

Gross, J.B., Meyer, B. and Perkins, M. (2015)

The rise of Astyanax cavefish

Rohner, N., Aspiras, A., Borowsky, R. and Tabin, C. (2015)

Hungry, fat and healthy - Studying the physiological basis of cave adaptation

Sumi, K., Asaoka, R., Nakae, M. and Sasaki, K. (2015)

Innervation of the lateral line system in the blind cavefish Astyanax mexicanus (Characidae) and comparisons with the eyed surface-dwelling form

Yoshizawa, M., Robinson, B.G., Duboue, E.R., Masek, P., Jaggard, J.B., O'Quin, K.E., Borowsky, R.L., Jeffery, W.R. and Keene, A.C. (2015)

Distinct genetic architecture underlies the emergence of sleep loss and prey-seeking behavior in the Mexican cavefish

Jaggard, J.B., Robinson, B., Oh, I., Masek, P., Yoshizawa, M. and Keene, A. (2015)

Distinct neural mechanisms underlie the convergent evolution of sleep loss in Astyanax

Ma, L., Carlson, B., Stahl, B., Powers, M. and Gross, J.B. (2015)

Candidate genes analysis for pigment development in Astyanax cavefish

Powers, A.K., Sung, J.Y.T. and Gross, J.B. (2015)

Investigating a potential relationship between constructive trait evolution and aberant cranial phenotypes in Asyanax cavefish

Devos, L, Alie, A. and Retaux, S. (2015)

Developmental evolution of the basal forebrain in cavefish

Riddle, M. and Tobin, C.J. (2015)

Astyanax mexicanus as a model to study metabolism and the evolution of the digestive system

Garcia, O.M., Santacruz, A., Reynoso, V.H. and Maldonado, E. (2015)

Spatial memory experiments in Astyanax mexicabus

Aspiras, A.C., Rohner, N., Martineau, B., Borowsky, R.L. and Tabin, C.J. (2015)

Melanocortin 4 receptor mutations contribute to the adaptation of cavefish to nutrient-poor conditions

Kasumyan, A. O. and Marusov, E. A. (2015)

Chemoorientation in the feeding behavior of the blind Mexican cavefish Astyanax fasciatus (Characidae, Teleostei)

Keene, A. (2015)

Convergent evolution of sleep loss

Robinson, B.G., Jaggard, J.B., Yoshizawa, M. and Keene, A.C. (2015)

The evolution of sleep loss in relation to metabolic processes in Mexican cavefish

Aspiras A.C., Rohner N., Martineau B., Borowsky R.L. and Tabin C.J. (2015)

Melanocortin 4 receptor mutations contribute to the adaptation of cavefish to nutrient-poor conditions

Stemmer, M., Schuhmacher, L.-N., Foulkes, N.S., Bertolucci, C. and Wittbrodt, J. (2015)

Cavefish eye loss in response to an early block in retinal differentiation progression

Tabin, J., Rohner, N., Haro, A., Kowalko, J., Martineau, B., Borowsky, R. and Tabin, C. (2015)

The evolution of temperature in Astyanax

Moran, D., Softley, R. and Warrant, E.J. (2015)

The energetic cost of vision and the evolution of eyeless Mexican cavefish

Silva, D. M. Z. A., Utsunomia, R., Pansonato-Alves, J.C., Oliveira, C. and Foresti, F. (2015)

Chromosomal mapping of repetitive DNA sequences in five species of Astyanax (Characiformes, Characidae) reveals independent location of U1 and U2 snRNA sites and association of U1 snRNA and 5S rDNA

Hinaux, H., Recher, G., Blin, M., Devos, L., Alié, A. and Rétaux, S. (2015)

Sensory evolution in blind cavefish is driven bt early embryonic events during gasrulation and neurulation

McGaugh, S. E., Weagley, J., Jeffery, W.R., Yoshizawa, M., O'Quin, K., Espinasa, L., Rohner, N., Borowsky, R. and Warren, W. (2015)

Population genomics of cavefish

Yoshizawa, M. and Macaspac, C. (2015)

How to build DIY water-flow system that successfully makes a cavefish spawn

Reyes, W.D. (2015)

Effects of temperature and water flow on morphology of Astyanax mexicanus (Teleostei: Characidae):

Hernandez Mena, D., Santacruz Vázquez, A.O., Ornelas García, P., Mendoza Garfias, B., Ponce de León, G.P. (2015)

Endohelminth parasites of the genus Astyanax through its geographical distribution in Mexico

Soares, D. (2015)

Functional imaging of circuits commonly associated with vision processing in the Astyanax blind cavefish

Yoshizawa, M. (2015)

Behaviors of cavefish offer insight into developmental evolution.

Bilandzija, H. (2015)

The loss of body pigmentation has evolved independantly in multiple animal taxa that have successfully colonised subterranean habitats

Wang, X, Pan, X, Jiang, W., Yang, K, Liu, Q and Yang, J (2015)

Establishment and cryopreservation of a cell line from cavefish Sinocyclocheilus anshuiensis

Hinaux, H., Blin, M., Fumey, J., Legendre, L., Heuze, A., Casane, D. and Retaux, S. (2015)

Lens defects in Astyanax mexicanus cavefish: Evolution of crystallins and a role for alphaA-crystallin

Carlson, B.M., Onusko, S.W. and Gross, J.B. (2015)

A high-density linkage map for Astyanax mexicanus Using genotyping-by-sequencing technology

Fumey, J., Hinaux, H., Noirot, C., Rétaux S. and Casane, D. (2015)

Evidence of late Pleistocene origin of Astyanax mexicanus cavefish

Kulpa, M., Bak-Coleman, J. and Coombs, S. (2015)

The lateral line is necessary for blind cavefish rheotaxis in non-uniform flow

Shoen, E., Jeffery, W. and Bilandžija, H. (2016)

Adaptive differences between dopamine-related locomotor activity in cave and surface dwelling Astyanax mexicanus

Espinasa, L. and Espinasa, M. (2016)

Hydrogeology of Caves in the Sierra de El Abra Region

Hollifield, B., Bilandžija, H. and Jeffery, W. (2016)

Understanding the colonization of caves: Effects of constant darkness on the surface form of Astyanax mexicanus

Piscor, D. and Parise-Maltempi, P. P. (2016)

Chromosomal mapping of H3 histone and 5S rRNA genes in eight species of Astyanax (Pisces, Characiformes) with different diploid numbers: syntenic conservation of repetitive genes

Martin, L., Bilandžija, H., Soueidan, S. and Jeffery, W. (2016)

The relationship between differential anesthesia tolerance and melanin pigment development in cave-adapted and surface Astyanax mexicanus

Piscor, D., Centofante, L and Parise-Maltempi, P. P. (2016)

Highly similar morphologies between chromosomes bearing U2 snRNA gene clusters in the group Astyanax Baird and Girard 1854 (Characiformes: Characidae): An evolutionary approach in species with 2n=36, 46, 48 and 50

Soares, D., Niemiller, M.L. and Higgs, D.M. (2016)

Hearing in Cavefishes

Gross, J.B., Stahl, B.A., Powers, A.K. and Carlson, B.M. (2016)

Natural bone fragmentation in the blind cave-dwelling fish, Astyanax mexicanus: candidate gene identification through integrative comparative genomics

Kowalko, J.E., Ma, L. and Jeffery, W.R. (2016)

Genome editing in Astyanax mexicanus using transcription activator-like effector nucleases (TALENs)

Jeffery, W.R. (2016)

Concluding remarks: The Astyanax community

Rossini, B.C., Oliveira, C.A.M., Melo, F.A.G., Bertaco, V.A., Astarloa, J.M.D., Rosso, J.J., Fauto, F. and Oliveira, C. (2016)

Highlighting Astyanax Species Diversity through DNA Barcoding.

Atukorala, A.D.S. and Franz-Odendaal, T.A. (2016)

Evolution and Development of the Cavefish Oral Jaws: Adaptations for Feeding

Beale, A.D. and Whitmore, D. (2016)

Daily rhythms in a timeless environment: Circadian clocks in Astyanax mexicanus

Moller, P.R., Knudsen, S.W., Schwarzhans, W. and Nielsen, J.G. (2016)

A new classification of viviparous brotulas (Bythitidae) – with family status for Dinematichthyidae – based on molecular, morphological and fossil data

Jeffery, W.R. (2016)

The comparative organismal approach in evolutionary developmental biology: Insights from ascidians and cavefish

Jeffery, W.R. (2016)

Homocystinuria in Cavefish: Molecular analysis of an Astyanax eye QTL reveals the role of cystathionine ß-synthase in eye degeneration

Rohner, N. (2016)

Selection through standing genetic variation

Zhang, C.G. and Zhou, Y.H. (2016)

Species diversity and distribution of inland fishes in China

Aspiras, A., Tabin, C. and Rohner, N. (2016)

Astyanax mexicanus as a natural model for metabolic adaptation

Gross, J.B. (2016)

Convergence and parallelism in Astyanax cave-dwelling fish

Yang,J., Chen,X., Bai,J., Fang,D., Qiu,Y., Jiang,W., Yuan,H., Bian,C., Lu,J., He,S., Pan,X., Zhang,Y., Wang,X., You,X., Wang,Y., Sun,Y., Mao,D., Liu,Y., Fan,G., Zhang,H., Chen,X., Zhang,X., Zheng,L., Wang,J., Cheng,L. (2016)

The Sinocyclocheilus cavefish genome provides insights into cave adaptation

Hinaux, H., Retaux, S. and Elipot, Y. (2016)

Social behavior and aggressiveness in Astyanax

Volkoff, H. (2016)

Feeding behavior, starvation response, and endocrine regulation of feeding in Mexican blind cavefish (Astyanax fasciatus mexicanus)

Yamamoto, Y. (2016)

Molecular Mechanisms of Eye Degeneration in Cavefish

Hinaux, H., Devos, L., Blin, M., Elipot, Y., Bibliowicz, J., Alei, A. and Retaux, S. (2016)

Sensory evolution in blind cavefish is driven by early embryonic events during gastrulation and neurulation.

Knudsen, S.W., Møller, P.R., Schwarzhans, W. and Nielsen, J.G. (2016)

Molecular, morphological and fossil input data for inferring relationship among viviparous brotulas (Bythitidae) – Resulting in a family status change for Dinematichthyidae

Qiu, Y., Yang, J.X.,, Jiang, W.S., Chen, X., Bian, C. and Shi, Q. (2016)

A genomic survey on the immune differences among Sinocyclocheilus fishes

Cartwright, R.A., Schwartz, R.S., Merry, A.L. and Howell, M.M. (2016)

Strong selection is necessary for evolution of blindness in cave dwellers

Moller, P.R., Knudsen, S.W., Schwarzhans, W. and Nielsen, J.G. (2016)

A new classification of viviparous brotulas (Bythitidae) – with family status for Dinematichthyidae – based on molecular, morphological and fossil data

Gross, J.B. and Powers, A.K. (2016)

The evolution of the cavefish craniofacial complex

Knudsen, S.W., Møller, P.R., Schwarzhans, W. and Nielsen, J.G. (2016)

Molecular, morphological and fossil input data for inferring relationship among viviparous brotulas (Bythitidae) – Resulting in a family status change for Dinematichthyidae

Gross, J.B., Gangidine, A and Powers, A.K. (2016)

Asymmetric facial bone fragmentation mirrors asymmetric distribution of cranial neuromasts in blind Mexican cavefish

Retaux, S., Alie, A., Blin, M., Devos, L., Elipot, Y. and Hinaux, H. (2016)

Neural development and evolution in Astyanax mexicanus: Comparing cavefish and surface fish brains

Ma, L., Stahl, B., Adams, H. and Gross, J. (2016)

Molecular analysis of melanophore lineage genes in cavefish depigmentation

Gross, J.B., Powers, A.K., Davis, E.M. and Kaplan, S.A. (2016)

A pleiotropic interaction between vision loss and hypermelanism in Astyanax mexicanus cave x surface hybrids

Zhang, C.G. and Zhou, Y.H. (2016)

Species diversity and distribution of inland fishes in China

Keene, A.C., Yoshizawa, M. and McGaugh, S.E. (2016)

Biology and Evolution of the Mexican Cavefish

Powers, A. Davis, E., Kaplan, S. and Gross, J. (2016)

The evolution of craniofacial shape change in the blind Mexican Cavefish.

Yoshizawa, M., Settle, A., Macaspac, C., Fernandes, V. Yoshida, M. and Keene, A. (2016)

Adaptation through changes of behavioral and morphological traits in Mexican Cavefish

Pennisi, E. (2016)

Antisocial cave fish may hold clues to schizophrenia, autism

Wilkens, H (2016)

Genetics and hybridization in surface and cave Astyanax (Teleostei): a comparison of regressive and constructive traits

The Sinocyclocheilus cavefish genome provides insights into cave adaptation

Pennisi, E (2016)

Blind cave fish may provide insights into human health

Xing, Y.C., Zhang, C.G., Fan, E.Y. and Zhao, Y.H. (2016)

Freshwater fishes of China: species richness, endemism, threatened species and conservation

Santacruz, A., Garcia, O.M.., Tinoco-Cuellar, M., Rangel-Huerta, E. and Maldonado, E. (2016)

Spatial mapping in perpetual darkness: EvoDevo of behavior in Astyanax mexicanus cavefish

Elliott, W.R. (2016)

Cave biodiversity and ecology of the Sierra de El Abra region

Faloh-Gandarilla, I., Alvarez-Lajonchere, L.S., García-Machado, E., Guiérrez de los Reyes, E., Orozco, M.V., Cortés, R., Alfonso, Y., Lemus, E., Corrada Wong, R.I., Chevalier-Monteagudo, P., Fernández Osoria, A.R., Pérez de los Reyes, R. and I. Àlvarez, S (2016)

Catálogo ilustrado de los especímenes tipo de peces cubanos II (Osteichthyes, clase: Actinopterygii: Cyprinodontiformes, Gadiformes, Lampridiformes, Mugiliformes, Myctophiformes, Ophidiformes).

Duboue, E.R. and Keene, A.C. (2016)

Investigating the evolution of sleep in the Mexican cavefish

Borowsky, R. (2016)

Regressive evolution: Testing hypotheses of selection and drift

Elliott, W.R. (2016)

Cave exploration and mapping in the Sierra de El Abra Region

Casane, D. and Retaux, S. (2016)

Evolutionary genetics of the cavefish Astyanax mexicanus

Foulkes, N.S., Whitmore, D., Vallone, D and Bertolucci, C. (2016)

Studying the evolution of the vertebrate circadian clock: The power of fish as compataive models

Tabin, C.J. (2016)

Introduction: The Emergence of the Mexican Cavefish as an Important Model System for Understanding Phenotypic Evolution

Beale, A., Whitmore, D. and Moran, D. (2016)

Life in a dark biosphere: A review of circadian physiology in "arrhythmic" environments

Lyon, A., Krutzler, A.J., Gross, J.B. and O'Quin, K.E. (2016)

Two to three genes control scleral ossification in blind Astyanax mexicanus cavefish

Schmitter-Soto, J.J. (2016)

A phylogeny of Astyanax (Characiformes: Characidae) in Central and North America

O'Quin, K.E., Doshi, P., Lyon, A., Hoenemeyer, E., Yoshizawa, M. and Jeffery, W.R. (2016)

The evolution of scleral ossification in the Mexican Cavefish (Astyanax mexicanus)

O'Quin, K. and McGaugh, S.E. (2016)

Mapping the genetic basis of troglomorphy in Astyanax: How far we have come and where do we go from here?

Yoshizawa, M. (2016)

The evolution of sensory adaptation in Astyanax mexicanus

Jeffery, W.R., Ma, L., Parkhurst, A. and Bilandzija, H. (2016)

Pigment regression and albinism in Astyanax cavefish

He, S., Lu, J., Jiang, W., Yang, S., Yang, J. and Shi, Q. (2016)

The complete mitochondrial genome sequence of a cavefish Sinocyclocheilus anshuiensis (Cypriniformes: Cyprinidae)

Burt de Perera, T., Holbrook, R. and Davis, V. (2016)

The representation of three-dimensional space in fish

Bilandžija, H. (2016)

Evolution of melanin pigment regression in cave animals

Carlson, B.M. and Gross, J.B. (2016)

The unusual suspects: Genetic analysis reveals candidate genes potentially underlying altered activity profiles in the blind Mexican tetra, Astyanax mexicanus

Bilandžija, H. (2016)

Adaptive differences between dopamine-related locomotor activity in cave and surface dwelling Astyanax mexicanus

Cartwright, R.A., Schwartz, R.C., Merry, A.L. and Howell, M.M. (2017)

The importance of selection in the evolution of blindness in cavefish

Espinasa, L., Bonaroti, N., Wong, J., Pottin, K., Queinnec, E. and Retaux, S. (2017)

Contrasting feeding habits of post-larval and adult Astyanax cavefish

Poulson, T.L (2017)

Book review: Wilkens and Strecker 2017 Evolution in the dark

Espinasa, L., Gibbon, D., Rutkowski, J., Collins, E. and Rohner, N. (2017)

Recuperation of vision in a blind cavefish population.

Herman, A., Weagley, J., Jeffery, W.R., Borowsky, R., Brandvain, Y., Bilandžija, H., Espinasa, L., O'Quin, K., Ornelas-García, C., Gilbertson, E., Passow, C., Yoshizawa, M., Warren, W. and McGaugh, S.E. (2017)

Population genomics in Astyanax

Di Tizio, L., Di Francesco, N., Pennelli, M. and Placentile, G. (2017)

Osservazioni in acquario sulla fenologia del caracide cieco delle grotte Astyanax jordani

Mifsud. N. and Baker, N. (2017)

Poissons mexicains: une fenêtre sur l’évolution.

Fernandes, V., Macaspac, C. and Yoshizawa, M. (2017)

How enhancement of sensory system is integrated to generate adaptive behavior

Jaggard, J.B., Robinson, B.G., Stahl, B, Oh, I., Masek, P., Yoshizawa, M. and Keene, A. (2017)

The lateral line confers evolutionarily derived sleep loss in the Mexican cavefish.

Peng, S, Lu, J, Yang, J and al., et (2017)

The complete mitochondrial genome of horned Golden-line barbell, Sinocyclocheilus rhinocerous (Cypriniformes, Cyprinidae)

Stahl, B.A., Jaggard, J.B., Duboue, E.R. and Keene, A.C. (2017)

The evolution of neural circuitry regulating sleep and arousal in the blind mexican cavefish

Simon, N., Fujita, S., Porter, M. and Yoshizawa, M. (2017)

Extra-ocular opsin expression of Astyanax mexicanus cave and surface morphs

Hyacinthe, C., Aattia, J., Froc, C. and Retaux, S. (2017)

Evolution of acoustic communication in the blind cavefish Astyanax mexicanus

Delić, T., Trontelj, P., Rendoš, M. and Fišer, C. (2017)

The importance of naming cryptic species and the conservation of endemic subterranean amphipods

Stahl, B.A. and Gross, J.B. (2017)

A comparative transcriptomic analysis of development in two Astyanax cave populations

Simon, V., Elleboode, R., Mahé,K. Legendre, L., Ornelas‑Garcia, P., Espinasa, L. and Rétaux, S. (2017)

Comparing growth in surface and cave morphs of the species Astyanax mexicanus: insights from scales

Ornelas-Garcia, C.P., Powers, A., Berning, D., Rodiles, R., Barluenga, M. and Gross, J.B. (2017)

Transcriptome analyses and 3d geometric morphometrics characterization of lacustrine species pairs in Astyanax genus

Jeffery, W.R., Ma, L., Tomins, K., Castranova, D., Weinstein, B.M. and Gore, A. (2017)

Analysis of the eye QTL gene CBSA reveals the role of cranial vasculature in regression of the cavefish visual system

Gorički, S., Stanković, D., Snoj, A., Kuntner, M., Jeffery, W.R., Trontelj, P., Pavićević, M., Grizelj, Z., Năpăruş-Aljančič, M. and Aljančič, G. (2017)

Environmental DNA in subterranean biology: range extension and taxonomic implications for Proteus

Pierre, C., Froc, C., Callebert, J. and Rétaux, S. (2017)

Functional and behavioral consequences of the mutation in MAO in the blind cavefish Astyanax mexicanus

Riddle, M., Finley, M., Marancik, D., Martineau, B. and Tabin, C. (2017)

What’s in your water? Pathogen landscape analysis of lab-raised Astyanax mexicanus; practical guidelines to increase biosecurity

Lyon, A., Powers, A.K., Gross, J.B. and O'Quin, K.E. (2017)

Two – three loci control scleral ossicle formation via epistasis in the cavefish Astyanax mexicanus

Jaggard, J.B., Robinson, B.G., Stahl, B.A., Oh, I., Masek, P., Yoshizawa, M. and Keene, A.C. (2017)

The lateral line confers evolutionarily derived sleep loss in the mexican cavefish

Krishnan, J. and Rohner, N. (2017)

Cavefish and the basis for eye loss

Gross, J.B. (2017)

Evolution and development of cranial asymmetry in Astyanax cavefish

Riddle, M., Aspiras, A., Tabin, J., Damen, F., Martineu, B., Peavey, M. and Tabin, C. (2017)

It takes guts to live in a cave: Investigating the genetic basis of cave-specific gastrointestinal (gi) and metabolic adaptations

Kaplan, S.A., Powers, A.K. and Gross, J.B. (2017)

Understanding the Origin of Cranial Bone Fragmentation: Live-fluorescent Imaging Across Astyanax mexicanus Development

Retaux, S., Bibliowicz, J., Blin, M., Elipot, Y., Espinasa, L., Hinaux, H. and Tine, E. (2017)

Mechanisms underlying the evolution of olfactory capacities in blind cavefish

Krishnan, J., Seidel, C. and Rohner, N. (2017)

Regulatory evolution in cavefish metabolism

Alvarado, C.G., Gálvez Hernández, O., Garduño Sánchez, M. and Ornelas García, C.P. (2017)

Parallel evolution of body shape in Astyanax (Characidae) morphotypes

Hinaux, H., Recher, G., Alie, A., Legendre, L., Blin, M. and Retaux, S. (2017)

Lens apoptosis in the Astyanax blind cavefish is not triggered by its small size or defects in morphogenesis

Wilkens, H. and Strecker, U. (2017)

Evolution in the dark: Darwin's loss without selection

Powers, A.K., Davis, E.M., Kaplan, S.A. and Gross, J.B. (2017)

Cranial asymmetry arises later in the life history of the blind Mexican cavefish, Astyanax mexicanus

Aspiras, A.C., Riddle, M., Zueckert-Gaudenz, K., Peuß, R., Martineau, B., Box, A., Levy, M., Tabin, J.A., McGaugh, S., Borowsky, R., Tabin, C.J. and Rohner, N. (2017)

Insulin resistance in cavefish as an adaptation to a nutrient-poor environment

Yoshizawa, M., Valdez, C., Yew, J., Coyle, K. and Roberts, R. (2017)

Rapid evolution of the gut symbionts and asd-like behavior in the extreme cave environment

Powers, A.K., Davis, E.M., Kaplan, S.A. and Gross, J.B. (2017)

The evolution of cranial asymmetry across the life history of the blind mexican cavefish

Bonaroti, N., Rutkowski, J., Rétaux, S., Collins, E., Ornelas García, P., Heintz, C. and Espinasa, L. (2017)

A year in the life of two populations of Astyanax mexicanus.

Maldonado, E., García O.M. and Santacruz, A. (2017)

Evodevo and adaptations to perpetually dark environments: The left-right swimming preference in cave and surface morphs from Astyanax mexicanus

Riddle, M.R.; Tabin, C.J (2017)

The eyeless Mexican cavefish Astyanax mexicanus as a model to investigate development and evolution of the gastrointestinal (GI) tract

Collins, E., Rutkowski, J., Ornelas García, P., Rétaux, S., Rohner, N. and Espinasa, L. (2017)

Divergent evolutionary pathways for aggression and territoriality in Astyanax cave fish

Box, A.C., Peuß, R., Haug, J. and Rohner, N. (2017)

Immunology without antibodies: Studying fish hematopoietic tissue using intrinsic cell signals, image cytometry and advanced analysis methods

Tabin, J., Rohner, N., Haro, A., Kowalko, J., Martineau, B., Borowsky, R. and Tabin, C. (2017)

The evolution of temperature preference in the mexican cave fish Astyanax mexicanus

Torres-Paz, J., Alié, A., Devos, L., Prunier, L., Boulet, F., Blin, M., Elipot, Y. and Rétaux, S. (2017)

Developmental evolution of the prosencephalon in blind cavefish: Origins of natural variations in neuropeptidergic patterning and their behavioral consequences

Schmitter-Soto, J.J. (2017)

A revision of Astyanax (Characiformes: Characidae) in Central and North America, with the description of nine new species

Peña-Herrejón, Guillermo A. Sanchez-Velazquez, Julieta Cruz-Hernández, Andrez Aguirre-Becerra, Humberto García-Trejo, Fernando (2017)

Breeding system for Astyanax mexicanus

Gore, A.V., Tomins, K., Iben, J., Castranova, D., Davis, A., Parkhurst, A., Soueidan, S., Jeffery, W.R. and Weinstein, B.M. (2017)

Role of DNA methylation in cavefish eye specific gene repression

Kopp, J., Coppola, J. and Espinasa, L. (2017)

Phylogeographical convergence between two troglobitic organisms in the Sierra de El Abra

Fumey, J., Hinaux, H., Noirot, C., Thermes, C., Retaux, S. and Casane, D. (2017)

Evidence for Late Pleistocene origin of Astyanax mexicanus cavefish.

Gore, A.V., Tomins, K.A., Iben, J., Ma, L., Castranova, D., Davis, A.E., Parkhurst, A., Jeffery, W.R. and Weinstein, B.M. (2017)

An epigenetic mechanism for cavefish eye degeneration

Gore, A.V., Tomins K.A., Iben, J., Ma, L., Castranova, D., Davis, A.E., Parkhurst, A., Jeffery, W.R. and Weinstein, B.M. (2018)

An epigenetic mechanism for cavefish eye degeneration

Zhao, H., Di Mauro, G., Lungu-Mitea, S., Negrini, P., Guarino, A.M., Frigato, E., Braunbeck, T., Ma, H., Lamparter, T., Vallone, D., Bertolucci, C. and Foulkes, N.S. (2018)

Modulation of DNA repair systems in blind cavefish during evolution in constant darkness

Ornelas-García, P., Pajares, S., Sosa-Jiménez, V.M., Rétaux, S. and Miranda-Gamboa, R.A. (2018)

Microbiome differences between river-dwelling and caveadapted populations of the fish Astyanax mexicanus (De Filippi, 1853)

Ceinos, R., Frigato, E., Pagano, C., Fröhlich, N., Negrini, P., Cavallari, N., Vallone, D., Fuselli, S., Bertolucci, C. and Foulkes, N. (2018)

Mutations in blind cavefish target the light-regulated circadian clock gene, period 2

Klaassen, H., Wang, Y., Adamski, K., Rohner, N. and Kowalko, J.E. (2018)

CRISPR mutagenesis confirms the role of oca2 in melanin pigmentation in Astyanax mexicanus

Rohner, N. (2018)

“Out of the dark” Cavefish are entering biomedical research

Helena, B., Lindsey, A., Li, M., Kenneth, J.R. and William, R.J. (2018)

Behavioural changes controlled by catecholaminergic systems explain recurrent loss of pigmentation in cavefish

Bilandzija, H., Abraham, L., Ma, L., Renner, K.J., & Jeffery, W.R. (2018)

Behavioural changes controlled by catecholaminergic systems explain recurrent loss of pigmentation in cavefish

Zhang, X.-Y., Huang, Z.-Q., Ning, T., Xiang, X.H. Li, C.-Q. Chen, S.-Y. and Xiao, H. (2018)

Microscopic and submicroscopic gradient variation of olfactory systems among six Sinocyclocheilus species living in different environments

Espinasa, L., Hoese, G., Toulkeridis, T. and Toomey, R. (2018)

Corroboration that the Mc1rGly/Ser mutation correlates with the phenotypic expression of pigmentation in Astroblepus

Torres-Dowdall, J., Karagic, N., Plath, M. and Riesch, R. (2018)

Evolution in caves: selection from darkness causes spinal deformities in teleost fishes

Espinasa, L., Robinson, J. and Espinasa, M. (2018)

Mc1r gene in Astroblepus pholeter and Astyanax mexicanus: Convergent regressive evolution of pigmentation across cavefish species

Herman, A., Brandvain, Y., Weagley, J., Jeffery, W.R., Keene, A.C., Kono, T.J., Bilandžija, H., Borowsky, R., Espinasa, L., O'Quin, K., Ornelas-García, C.P., Yoshizawa, M., Carlson, B, Maldonado E, Gross JB, Cartwright RA, Rohner N, Warren WC, McGaugh SE. (2018)

The role of gene flow in rapid and repeated evolution of cave‐related traits in Mexican tetra, Astyanax mexicanus

Shiriagin, V. and Korsching, S.I. (2018)

Massive expansion of bitter taste receptors in blind cavefish, Astyanax mexicanus

Atukorala, A.D.S. and Franz-Odendaal, T.A. (2018)

Genetic linkage between altered tooth and eye development in lens-ablated Astyanax mexicanus

Frøland Steindal, I.V., Beale, A.D., Yamamoto, Y. and Whitmore, D. (2018)

Development of the Astyanax mexicanus circadian clock and non-visual light responses

Espinasa, L. (2018)

The Guerrero fish population: Astyanax aeneus as a comparative cavefish model

Retaux, S. (2018)

The healthy diabetic cavefish conundrum

Pagano, C., Siauciunaite, R., Idda, M.L., Ruggiero, G., Ceinos, R.M., Pagano, M., Frigato, E., Bertolucci, C., Foulkes, N.S. and Vallone, D. (2018)

Evolution shapes the responsiveness of the D-box enhancer element to light and reactive oxygen species in vertebrates

Espinasa, L., Legendre, L., Fumey, J., Blin, M., Rétaux, S. and Espinasa, M. (2018)

A new cave locality for Astyanax cavefish in Sierra de El Abra, Mexico

Blin, M., Tine, E., Meister, L., Elipot, Y., Bibliowicz, J., Espinasa, L. and Rétaux, S. (2018)

Developmental evolution and developmental plasticity of the olfactory epithelium and olfactory skills in Mexican cavefish

Mirande, J.M. (2018)

Morphology, molecules and the phylogeny of Characidae (Teleostei, Characiformes)

Jeffery, W.R. (2018)

Maternal genetic effects in Astyanax cavefish development

Bussotti, S., Di Franco, A., Bianchi, C.N., Chevaldonné, P., Egea, L., Fanelli, E., Lejeusne, C., Musco, L., Navarro-Barranco, C., Pey, A. and Planes, S. (2018)

Fish mitigate trophic depletion in marine cave ecosystems

Atukorallaya, D.S.A. and Ratnayake, R.K. (2018)

Shaping the craniofacial skeleton of Mexican cavefish (Astyanax mexicanus); Role of Osteoblast and Osteoclast.

Borowsky, R. (2018)

Primer. Cavefishes

Koch, L. (2018)

All eyes on rapid adaptive evolution

Jaggard, J.B., Stahl, B.A., Lloyd, E., Prober, D.A., Duboue, E.R. and Keene, A.C. (2018)

Hypocretin underlies the evolution of sleep loss in the Mexican cavefish

Riddle, M.R., Aspiras, A.C., Gaudenz, K., Peuß, R., Sung, J.Y., Martineau, B., Peavey, M., Box, A.C., Tabin, J.A., McGaugh, S., Borowsky, R., Tabin, C.J. and Rohner, N. (2018)

Insulin resistance in cavefish as an adaptation to a nutrient-limited environment

Tabin, J.A., Aspiras, A., Martineau, B., Riddle, M., Kowalko, J., Borowsky, R., Rohner, N. and Tabin, C.J. (2018)

Temperature preference of cave and surface populations of Astyanax mexicanus

Powers, A.K., Kaplan, S.A., Boggs, T.E. and Gross, J. (2018)

Facial bone fragmentation in blind cavefish arises through two unusual ossification processes

Ornelas-García, P,. Pajares, S., Sosa-Jiménez, V.M., Rétaux, S. and Miranda-Gamboa, R.A. (2018)

Microbiome differences between riverdwelling and cave-adapted populations of the fish Astyanax mexicanus (De Filippi, 1853)

Tang, J.L.Y., Guo, Y., Stockdale, W.T., Rana, K., Killen, A.C., Mommersteeg, M.T.M. and Yamamoto, Y. (2018)

The developmental origin of heart size and shape differences in Astyanax mexicanus populations

Ahmad, H., Azizan, T.R.P.T., Noor, M.H.M., Hassim, H.A. and Daud, H.M. (2018)

Development of a Y-maze task for studying cognitive function using teleost zebrafish (Danio rerio) and cavefish (Astyanax mexicanus)

Rohner, N. (2018)

Cavefish as an evolutionary mutant model system for human disease

Borowsky, R., Luk, A., He, X.J. and Kim, R.S. (2018)

Unique sperm haplotypes are associated with phenotypically different sperm subpopulations in Astyanax fish

Carlson, B.M. and Gross, J.B. (2018)

Characterization and comparison of activity profiles exhibited by the cave and surface morphotypes of the blind Mexican tetra, Astyanax mexicanus

Sovrano, V.A., Potrich, D., Foà, A. and Bertolucci, C. (2018)

Extra-visual systems in the spatial reorientation of cavefish

Stockdale, W.T., Lemieux, M.E., Killen, A.C., Zhao, J., Hu, J., Riepsaame, J. Hamilton, N., Kudoh, T., Riley, P.R., van Aerle, R., Yamamoto, Y. and Mommersteeg, M.T.M. (2018)

Heart regeneration in the Mexican cavefish

Sears, C.R. and Gross, J.B. (2018)

The RNA Architecture of Life in the Dark: A Transcriptomic Assessment of Varying Photic Conditions in the Blind Mexican Cavefish, Astyanax mexicanus

Pazza, R., Dergam, J.A. and Kavalco, K.F. (2018)

Trends in karyotype evolution in Astyanax (Teleostei, Characiformes, Characidae): Insights from molecular data.

Garita-Alvarado, C.A., Barluenga, M. and Ornelas-García, C.P. (2018)

Parallel evolution of morphs of Astyanax species (Teleostei: Characidae) in México and Central America

Niu, C., Luo, J., Yang, J. and Zhao, Y. (2018)

Length–weight relationships of four cavefish species from China

Powers, A.K., Boggs, T.E. and Gross, J.B. (2018)

Canal neuromast position prefigures developmental patterning of the suborbital bone series in Astyanax cave- and surface-dwelling fish

Alie, A., Devos, L., Torres-Paz, J., Prunier, L., Boulet, F., Blin, M., Elipot, Y. and Retaux, S. (2018)

Developmental evolution of the forebrain in cavefish, from natural variations in neuropeptides to behavior

Kling, J. (2018)

Insulin resistance grows in the dark

Chin, J.S.R., Gassant, C.E., Amaral, P.M., Lloyd, E., Stahl, B.A., Jaggard, J.B., Keene, A.C. and Duboue, E.R. (2018)

Convergence on reduced stress behavior in the Mexican blind cavefish

Kopp, J., Avasthi, S. and Espinasa, L. (2018)

Phylogeographical convergence between Astyanax cavefish and mysid shrimps in the Sierra de El Abra, Mexico

Porter, M.L. and Sumner‐Rooney, L. (2018)

Evolution in the dark: Unifying our understanding of eye loss

Elliott, W.R. (2018)

The Astyanax Caves of Mexico: Cavefishes of San Luís Potosí, Tamaulipas, and Guerrero

Ojha, A. and Watve, M. (2018)

Blind fish: An eye opener

Yoshizawa, M., Settle, A., Hermosura, M.C., Tuttle, L.J., Cetraro, N., Passow, C.N. and McGaugh, S.E. (2018)

The evolution of a series of behavioral traits is associated with autism-risk genes in cavefish

Li, C.Q., Huang, H.T., Yang, S., He, H., Fu, Q.Y., Chen, S.Y. and Xiao, H. (2018)

Complete mitochondrial genome and phylogenetic analysis of Sinocyclocheilus oxycephalus (Cypriniformes: Cyprinidae)

Stern, D.B and Crandall, K.A. (2018)

The evolution of gene expression underlying vision loss in cave animals

Fernandes, V.F.L., Macaspac, C., Lu, L. and Yoshizawa, M. (2018)

Evolution of the developmental plasticity and a coupling between left mechanosensory neuromasts and an adaptive foraging behavior

Li, C.Q., Huang, H.T., Yang, S., He, H., Fu, Q.Y., Chen, S.Y. and Xiao, H. (2018)

Complete mitochondrial genome and phylogenetic analysis of Sinocyclocheilus oxycephalus (Cypriniformes: Cyprinidae)

Devitsina, G.V. and Golovkina, T.V. (2018)

Structural Organization of the Taste Apparatus in Characins (Characidae, Teleostei

Keene, A.C.and Duboue, E.R. (2018)

The origins and evolution of sleep

Xiong, S., Krishnan, J., Peuß, F. and Rohner, N. (2018)

Early adipogenesis contributes to excess fat accumulation in cave populations of Astyanax mexicanus

Riddle, M.R., Boesmans, W., Caballero, O, Kazwiny, Y. and Tabin,C.J. (2018)

Morphogenesis and motility of the Astyanax mexicanus gastrointestinal tract

Stahl, B.A., Sears, C.R., Ma, L., Perkins, M., & Gross, J.B. (2018)

Pmela and Tyrp1b contribute to melanophore variation in Mexican cavefish

Lloyd, E., Olive, C., Stahl, B.A., Jaggarda, J.B., Amaral, P., Dubouéa, E.R and Keene, A.C. (2018)

Evolutionary shift towards lateral line dependent prey capture behavior in the blind Mexican cavefish

Riddle, M., Martineau, B., Peavey, M. and Tabin, C. (2018)

Raising the Mexican tetra Astyanax mexicanus for analysis of post-larval phenotypes and whole-mount immunohistochemistry.

Davis, V.A., Holbrook, R.I. and Burt de Perera, T. (2018)

The influence of locomotory style on three-dimensional spatial learning

Torres-Paz,J., Hyacinthe, C., Pierre, C., Retaux, S. (2018)

Towards an integrated approach to understand Mexican cavefish evolution

Fumey, J., Hinaux, H., Noirot, C., Thermes, C., Rétaux, S. and Casane, D. (2018)

Evidence for late Pleistocene origin of Astyanax mexicanus cavefish

Gore, A., Jeffery, W., Retaux, S. and Rohner, N. (2018)

Cavefish development

Gross, J.B., Weagley, J., Stahl, B.A., Ma, L., Espinasa, L. and McGaugh, S.E. (2018)

A local duplication of the Melanocortin receptor 1 locus in Astyanax

Gore, A.V., Rohner, N., Rétaux, S. and Jeffery, W.R. (2018)

Seeing a bright future for a blind fish

Kasumyana, A.O. and Marusova, E.A. (2018)

Odor stimulation and relation to taste stimuli in the blind cave fish Astyanax fasciatus

Ma, L., Strickler, A.G., Parkhurst, A., Yoshizawa, M., Shi, J. and Jeffery, W.R. (2018)

Maternal genetic effects in Astyanax cavefish development

Kasumyan, A.O. and Marusov, E.A. (2018)

[Odor stimulation and relation to taste stimuli in the blind cave fish Astyanax fasciatus]

Ren, X.Y., Hamilton, N., Müller, F. and Yamamoto, Y. (2018)

Cellular rearrangement of the prechordal plate contributes to eye degeneration in the cavefish

Carlson, B.M., Klingler, I.B., Meyer, B.J. and Gross, J.B. (2018)

Genetic analysis reveals candidate genes for activity QTL in the blind Mexican tetra, Astyanax mexicanus

Stockdale, W.T., Deal, O., Heintz, C., Rohner, N., and Mommersteeg, M.T.M. (2019)

Glucose metabolism during heart regeneration in the Astyanax mexicanus

Kasumyan, A.O. and Vinogradskaya, M.I. (2019)

Palatability of bile substances for fish

Barash, D.P. (2019)

Review of: Wilkens and Strecker (2017) Evolution in the Dark: Darwin’s Loss Without Selection

Gore, A., Swearer, A., Iben, J. and Weinstein, B. (2019)

Cavefish: a model to study subcutaneous fat deposition

Chin, J.S.R., Loomis, C.L., Phan, T.A.N., Albert, L.T., Chang, L.P., Keene, A.C. and Duboué, E.R. (2019)

Diminished stress responses in the Mexican blind cavefish

Lunghi, E., Zhao, Y., Sun, X. and Zhao, Y. (2019)

Morphometrics of eight Chinese cavefish species

Hyacinthe, C., Attia, J. and Retaux, S. (2019)

Evolution of acoustic communication in blind cavefish

Luc, H., Sears, C., Raczka, A. and Gross, J.B. (2019)

Wholemount in situ hybridization for Astyanax embryos

Wilkens, H (2019)

The primacy of the genotype

Keene, A.C. (2019)

Genetic and evolutionary regulation of sleep-feeding interactions

Lunghi, E., Zhao, Y., Sun, X. and Zhao, Y. (2019)

Morphometrics of eight Chinese cavefish species

Betancur-R.R., Arcila, D., Vari, R.P. et al. (2019)

Phylogenomic incongruence, hypothesis testing, and taxonomic sampling: the monophyly of characiform fishes

Simon, V., Hyacinthe, C. and Retaux, S. (2019)

Breeding behavior in the blind Mexican cavefish and its river‐dwelling conspecific

Shimobayashi, M., Shetty, S., Frei, I.C., Wölnerhanssen, B.K., Weissenberger, D., Dietz, N., Thomas, A., Ritz, D., Meyer-Gerspach, A.C., Maier, T., Hay, N., Peterli, R., Rohner, N. (2019)

Diet-induced loss of adipose Hexokinase 2 triggers hyperglycemia

Devos, L., Edouard, J., Simon, V., Agnès, F., Sohm, F. and Rétaux, S. (2019)

Eye morphogenesis in the blind Mexican cavefish

Hu, Z., Lemieux, M. and Mommersteeg, M. (2019)

Differences in extracellular matrix deposition during heart regeneration and scarring in Astyanax mexicanus

Borowsky, R. (2019)

Gene flow from surface to cave populations of Astyanax mexicanus is ongoing

Kibele, C.S., Montgomery, J.C. and Radford, C.A. (2019)

The use of evoked potentials to determine sensory sub‑modality contributions to acoustic and hydrodynamic sensing

Riddle, M.R. and Tabin, C.J. (2019)

Little fish, big questions: A collection of modern techniques for Mexican tetra research

Jaggard, J., Lloyd, E., Loomis, C., Cook, C., Vega, P., McGaugh, S., Rohner, N., Bohrner, J., Duboue, E. and Keene, A.C. (2019)

A cavefish brain atlas reveals functional and anatomical evolution of morphology and neural activity with convergence of sleep and feeding circuits

Warren, W.C., Koren, S., Meyer, A. and Rohner, N. (2019)

The next generation of Asytanax mexicanus genome references

Mcgaugh, S.E., Weaver, S., Gilbertson, E.N., Garrett, B., Rudeen, M.I., Grieb, S., Roberts, J., Donny, A., Marchetto, P. and Gluesenkamp, A,G. (2019)

Evidence for rapid phenotypic and behavioural shifts in a recently established cavefish population

Piscor, D., Pozzobon, A.P.B., Fernandes, C.A., Centofante, L, and Parise-Maltempi, P.P. (2019)

Molecular clock as insight to estimate the evolutionary history and times of divergence for 10 nominal Astyanax species (Characiformes, Characidae): An evolutionary approach in species with 2n = 36, 46, 48, and 50 chromosomes

Bilandžija, H., Hollifield, B., Steck, M., Meng, G., Ng, M., Koch, A.D., Gračan, R., Ćetković, H., Porter, M.L., Renner, K.J. and Jeffery, W.R. (2019)

Phenotypic plasticity as a mechanism of cave colonization and adaptation

Jaggard, J.B., Lloyd, E., Lopatto, A., Duboue, E.R. and Keene, A.C. (2019)

Automated measurements of sleep and locomotor activity in Mexican cavefish.

Riddle, M., Damen, F., Aspiras, A., Tabin, J., McGaugh, S. and Tabin, C. (2019)

Investigating the genetic and developmental basis of gut length plasticity in A. mexicanus

Leclercq, J., Torres-Paz, J. and Rétaux, S. (2019)

Impact of maternal factors during evolution of gastrulation and forebrain morphogenesis in Astyanax mexicanus

McGaugh, S.E., Passow, C., Jaggard, J.B., Stahl, B. and Keene, A. (2019)

Sleep deprivation evokes unique expression responses across independently evolved cavefish

Coppola, J. and Espinasa, L. (2019)

Cave Astyanax: Hunters or scavengers? Evidence from gut contents

McGaugh, S.E., Passow, C.N., Jaggard, J.B., Stahl, B.A. and Keene, A.C. (2019)

Unique transcriptional signatures of sleep loss across independently evolved cavefish populations

Kowalko, J.E. (2019)

Elucidating the genetic basis of trait evolution in the cavefish

Legendre, L., Pere, S. and Rétaux, S. (2019)

Water quality of rivers and caves inhabited by Astyanax mexicanus surface fish and cavefish

Bilandžija, H., Hollifield, B., Steck, M., Meng, G., Ng, M., Bedek, J., Ćetković, H., Porter, M., Renner, K.J. ands Jeffery, W.R. (2019)

Phenotypic plasticity and genetic assimilation in the evolution of cave-adapted traits in Astyanax mexicanus

Legendre, L., Guillet, B., Leguay, E., Meunier, E., Keck, N. and Sohm, F. (2019)

RESAMA : French network for aquatic model animal health Monitoring. Focus on Astyanax mexicanus

van der Laan, R. (2019)

Freshwater fish list. An alphabetic scientific name list of the world's freshwater fishes and an overview of the scientific names used in the aquarium literature

Torres-Paz, J., Leclercq, J. and Rétaux, S. (2019)

Maternally regulated gastrulation as a source of variation contributing to cavefish forebrain evolution

McGaugh, S.E., Weaver, S., Gilbertson, E.N., Garrett, B., Rudeen, M.L., Grieb, S., Roberts, J., Donny, A., Marchetto, P. and Gluesenkamp, A.G. (2019)

Evidence for rapid phenotypic and behavioral change in a recently established cavefish population

Imarazene, B., Herpin, A., Feron, R., Postlethwait, J.H., Schartl, M., Retaux, S. and Guiguen, Y. (2019)

Micro-evolution of sex determination mechanisms and sex determining genes in the cavefish, Astyanax mexicanus

O’Gorman, M., Lewis, P., Keene, A., Kowalko, J. and Duboué, E. (2019)

Adapting zebrafish rearing techniques for Astyanax mexicanus

Fernandes, V.F.L., Hernandez, H., Doeden, N. and Yoshizawa, M. (2019)

Evolution of sensory-behavior laterality in Astyanax mexicanus

Ornelas-García, C.P., Pajares, S., Sosa-Jiménez, V.M., Rétaux, S. and Gamboa-Miranda, R. (2019)

Microbiome characterization of cave-adapted and surface populations of the fish Astyanax mexicanus (De Filippi, 1853)

Lloyd, E., Olive, C., Stahl, B.A., Jaggard, J.B., Amaral, P., Duboué, E.R. and Keene, A.C. (2019)

Evolutionary shift towards lateral line dependent prey-capture in the Mexican Cavefish

Atukorallaya, D., Bhatia, V. and Ratnayake, R. (2019)

Tooth and jaw development in health and disease; Insight form Mexican tetra (Astyanax mexicanus)

Simon, N., Fujita, S., Porter, M. and Yoshizawa, M. (2019)

Expression of extraocular opsin genes and light-dependent basal activity of blind cavefish

Kling, J. (2019)

To wild depths for new models

Mogdans, J. (2019)

Sensory ecology of the fish lateral line system: morphological and physiological adaptations for the perception of hydrodynamic stimuli

McDole, B., Jaggard, J., Duboue, E. and Keene, A.C. (2019)

Multiphoton ablation of HCRT neurons increases sleep in the Molino cavefish population

Loomis, C., Peuss, R., Green, M., McGaugh, S.E., Rohner, N., Keene, A.C. and Duboue, E.R. (2019)

Generation of a brain atlas for adult Astyanax reveal differences in distinct neuroanatomical sub-nuclei associated with cave-specific behaviors

Jeffery, W.R. (2019)

Astyanax mexicanus: A vertebrate model for evolution, adaptation, and development in caves

Paz, A., McDole, B., Duboue, E. and Keene, A.C. (2019)

Analysis of startle responses in A. mexicanus reveals possible effects of diminished predation

Torres-Paz, J., Leclercq. J. and Rétaux, S. (2019)

Evolution of gastrulation and forebrain morphogenesis in Astyanax mexicanus

Pierre, C., Torres-Paz, J., Froc, C., Callebert, J. and Rétaux, S. (2019)

Functional and behavioral consequences of the mutation in monoamine oxidase (MAO) in the blind cavefish Astyanax mexicanus

van der Weele, C.M. and Jeffery, W.R. (2019)

Cavefish embryos develop more red blood cells as an adaptation to hypoxia

Krishnan, J. and Rohner, N. (2019)

Regulatory evolution of metabolic adaptations in cavefish

Sifuentes-Romero I. and Kowalko, J.E. (2019)

Morphological variations in eye size: does rx3 play a role?

Phelps, A. and Gross, J. (2019)

Examination of pigmentation differences in cave and surface Astyanax mexicanus using in situ hybridization

Gallman, K., Rivera, D. and Soares, D. (2019)

Evolutionary increases in catecholamine signaling may underlie the emergence of adaptive traits and behaviors in the blind cavefish, Astyanax mexicanus

Krishnan, J. and Rohner, N. (2019)

Sweet fish: Fish models for the study of hyperglycemia and diabetes

Jeffery, W.R., Ma, L., Shi, J., Ng, M. and Gore,A. (2019)

Evolution of left-right axis asymmetry in Astyanax cavefish

Palluzzi, T., Rowland, R. and Gross, J. (2019)

The effect of neuromast position on bone fragmentation in the third suborbital bone of Astyanax mexicanus

Powers, A.K., Garita-Alvarado, C., Rodiles, R., Berning, D.J., Gross, J.B. and Ornelas-García, C.P. (2019)

Cranial plasticity in lake-dwelling Astyanax morphotypes corresponds to feeding preference

Stahl, B.A., Jaggard, J.B., Chin, J.S., Kowalko, J.E., Keene, A.C. and Duboué, E.R. (2019)

Manipulation of gene function in Mexican cavefish

Loomis, C., Peuß, R., Jaggard, J., Wang, Y., McKinney, S., Raftopoulos, S., Raftopoulos, A., Whu, D., Green, M., McGaugh, S.E., Rohner, N., Keene, A.C., Duboue, E.R. (2019)

An adult brain atlas reveals broad neuroanatomical changes in independently evolved populations of Mexican cavefish

Stockdale, W.T., Tang, J.L.Y., Hu, Z., Potts, H.G., Lemieux, M.E., Yamamoto, Y. and Mommersteeg, M.T.M. (2019)

Heart development and regeneration in Astyanax mexicanus

Xiong, S., Krishnan, J., Peuss, R. and Rohner, N. (2019)

How cavefish adapt to food limited environment?

Worsham, M., Fernandes, V.F.L., Settle, A., Balaan, C., Lactaoen, K., Tuttle, L.J., Iwashita, M. and Yoshizawa, M. (2019)

Behavioral tracking and neuromast imaging of Mexican cavefish.

Loomis, C., Peuss, R., Jaggard, J.B., Wang, Y., McKinney, S.A., Raftopoulos, S.C., … Duboue, E.R. (2019)

An adult brain atlas reveals broad neuroanatomical changes in independently evolved populations of Mexican cavefish

Policarpo, M., Fumey, J., Lafargeas, P., Legendre, L., Naquin, D., Thermes, C., Møller, P.R., Bernatchez, L., García-Machado, E., Rétaux, S. and Casane, D. (2019)

Molecular decay of light-processing genes in cavefishes: assessing the effects of time, genome architecture and gene flow

Potts, H.G., Stockdale, W.T., Choudhury, R.P. and Mommersteeg, M.T.M. (2019)

Investigating the role of CD11b/ITGAM, a leukocyte adhesion protein, in cardiac regeneration

Peuß, R., Zakibe, Z., Krishnan, J., Merryman, M.S., Baumann, D.P. and Rohner, N. (2019)

Gamete collection and In vitro fertilization of Astyanax mexicanus

Mogdans, J. (2019)

Sensory ecology of the fish lateral-line system: Morphological and physiological adaptations for the perception of hydrodynamic stimuli

Policarpo, M., Fumey, J., Lafargeas, P., Legendre, L., Naquin, D., Thermes, C., Møller, P.R., Bernatchez, L., García-Machado, E., Rétaux, S. and Casane, D. (2019)

Molecular decay of light-processing genes in cavefishes: assessing the effects of time, genome architecture and gene flow

Gil-Galvez, A., de la Calle Mustienes, E., Neto, A.., Bilandžija, H., Jeffery, W.R., Gómez-Skarmeta, J.L. (2019)

The role of Cis-Regulatory elements in morphological adaptation to cave environment in Astyanax mexicanus

Borowsky, R., Luk, A. and Kim, R.S. (2019)

Sperm swimming behaviors are correlated with sperm haploid genetic variability in the Mexican tetra, Astyanax mexicanus

Maximino, C., do Carmo Silva, R.X., dos Santos Campos, K., de Oliveira, J.S., Rocha, S.P., Pyterson, M.P., dos Santos Souza, D.P., Feitosa, L.M., Ikeda, S.R., Pimentel, A.F.N., Pâmila N. F. (2019)

Sensory ecology of ostariophysan alarm substances

Policarpo, M., Fumey, J., Lafargeas, P., Legendre, L., Naquin, D., Thermes, C., Møller, P.R., Bernatchez, L., García-Machado, E., Rétaux, S. and Casane, D. (2019)

Molecular decay of light-processing genes in cavefishes: assessing the effects of time, genome architecture and gene flow

Powers, A.K., Boggs, T.E., Kaplan, S.A., Davis, E.M. and Gross, J.B. (2019)

Sensory-skeletal integration and cranial asymmetry in cavefish

Chen, H., Li, C., Liu, T., Chen, S. and Xiao, H. (2019)

A metagenomic study of intestinal microbial diversity in relation to feeding habits of surface and cave-dwelling Sinocyclocheilus species

Fernandes, C.S., Batalha, M.A., Bichuette, M.E. (2019)

Dark diversity in the dark: a new approach to subterranean conservation

Policarpo, M., Fumey, J., Lafargeas, P., Legendre, L., Naquin, D., Thermes, C., Møller, P.R., Bernatchez, L., García-Machado, E., Rétaux, S. and Casane, D. (2019)

Molecular decay of light-processing genes in cavefishes: assessing the effects of time, genome architecture and gene flow

Devos, L., Klee, F., Edouard, J., Simon, V., Legendre, L., Khallouki, N.E., Barbachou, S., Sohm, F. and Rétaux, S. (2019)

Morphogenetic and patterning defects explain the coloboma phenotype of the eye in the Mexican cavefish

Hyacinthe, C., Attia, J. and Retaux, S. (2019)

Evolution of acoustic communication in the blind cavefish Astyanax mexicanus

Chen, H., Li, C., Liu, T., Chen, S. and Xiao, H. (2019)

A metagenomic study of intestinal microbial diversity in relation to feeding habits of surface and cave-dwelling Sinocyclocheilus species

Pennisi, E. (2019)

A lopsided face helps this eyeless cave fish navigate

Policarpo, M., Fumey, J., Lafargeas, P., Legendre, L., Naquin, D., Thermes, C., Møller, P.R., Bernatchez, L., García-Machado, E., Rétaux, S. and Casane, D. (2019)

Molecular decay of light-processing genes in cavefishes: assessing the effects of time, genome architecture and gene flow

Rétaux, S., Bibliowicz, Y., Blin, M., Elipot, Y., Espinasa, L., Hinaux, H. and Tine, E. (2019)

Olfactory capacities in blind cavefish

Emam, A., Yoffe, M., Cardona, H. and Soares, D. (2019)

Retinal morphology in Astyanax mexicanus during degeneration

Agnès, F., Devos, L. and Rétaux, S. (2019)

The embryonic eyefield of the cavefish Astyanax mexicanus

Worsham, M., Fang, J. and Yoshizawa, M. (2019)

Epigenetic regulation of phenotype of Mexican tetras

Sears, C.R. (2019)

Transcriptomic analysis of the effect of dark-rearing on Astyanax mexicanus

Fernández, A.A., Evans, E.I. and Baumann, D.P. (2019)

The importance of health monitoring in Astyanax mexicanus

Ma, L. and Jeffery, W.R. (2019)

Global analysis of maternal transcripts in Astyanax cavefish eggs

Reyes Corral, W.D. and Aguirre, W.E. (2019)

Effects of temperature and water turbulence on vertebral number and body shape in Astyanax mexicanus (Teleostei: Characidae)

Yoffe, M., Patel, K., Palia, E., Kolawole, S., Streets, A., Haspel, G. and Soares, D. (2019)

Hunting strategies and the lateral line of Astyanax mexicanus larva

Blin, M., Fumey, J., Père, S., Pierre, C., Torres-Paz, J., Simon, V., Espinasa, L. Legendre, L., Casane, D. and Rétaux, S. (2019)

Olfactory behavior of different wild Astyanax mexicanus populations

Duboue, E. (2019)

Evolution of stress responses in Mexican cavefish

Berning, D., Adams, H., Luc, H. and Gross, J.B. (2019)

In-frame indel mutations in the genome of the blind Mexican cavefish, Astyanax mexicanus

Stahl, B.A., Peuß, R., McDole, B., Kenzior, A., Jaggard, J.B., Gaudenz, K., Krishnan, J., McGaugh, S.E., Duboue, E.R., Keene, A.C. and Rohner, N. (2019)

Stable transgenesis in Astyanax mexicanus using the Tol2 transposase system

Atukorala, A.D.S., Bhatia, V. and Ratnayake, R. (2019)

Craniofacial skeleton of Mexican tetra (Astyanax mexicanus): As a bone disease model

Stahl, B.A., Peuß, R., McDole, B., Kenzior, A., Jaggard, J.B., Gaudenz, K., Krishnan, J., McGaugh, S.E., Duboue, E.R., Keene, A.C and Rohner, N. (2019)

Stable transgenesis in Astyanax mexicanus using the Tol2 transposase system

Boggs, T.E. and Gross, J.B. (2019)

Exploring the role of blood physiology in cave adaptation

Ditter, R.E., Erdman, R.B., Goebel, A.M. and Bracken-Grissom, H.D. (2019)

Widespread phenotypic hypervariation in the enigmatic anchialine shrimp Barbouria cubensis (Decapoda: Barbouriidae)

Garduño-Sánchez, M.A.A. and Ornelas-García, C.P. (2019)

Molecular evolution of rhodopsin gene in Astyanax mexicanus (De Filippi, 1853)

Peuß, R., Box, A.C., Wang, Y., Chen, S., Krishnan, J., Tsuchiya, D., Peak, A., Perera, A., Slaughter, B. and Rohner, N. (2019)

Cave adaptation shifts immune cell composition compensating increased inflammatory responses in Astyanax mexicanus

Ditter, R.E., Snyder, A.P., Schulman, S.E. and Bracken-Grissom, H.D. (2019)

Notes on the behavior and first records of three enigmatic anchialine shrimps (Decapoda: Caridea: Barbouriidae, Palaemonidae) in the Bahamas

Jazwinska, A. and Blanchoud, S. (2019)

Towards deciphering variations of heart regeneration in fish

McNeill-Jewer, C.A., Reinhardt, E.G., Collins, S., Kovacs, S., Chan, W.M., Devos and LeMaillot, F.C. (2019)

The effect of seasonal rainfall on nutrient input and biological productivity in the Yax Chen cave system (Ox Bel Ha), Mexico, and implications for μXRF core studies of paleohydrology

Yoshizawa, M., Valdez, C., Balaan, C., Lactaoen, K., Kato, J., Ito, M., Yew, J. and Iwashita, M. (2019)

Reciprocal social Interaction was recovered under the treatment of ketogenic diet

Ditter, R.E., Erdman, R.B., Goebel, A.M. and Bracken-Grissom, H.D. (2019)

Widespread phenotypic hypervariation in the enigmatic anchialine shrimp Barbouria cubensis (Decapoda: Barbouriidae)

Riddle, M.R., Aspiras, A., Damen, F., Hutchinson, J.N., Chinnapen, D. and Tabin, C.J. (2019)

Genetic architecture underlying changes in carotenoid accumulation during the evolution of the Blind Mexican cavefish, Astyanax mexicanus

Kindl, G.H. and O’Quin, K.E. (2019)

On intra- and inter-specific variation in teleost scleral ossification

Keene, A.C. and Appelbaum, L. (2019)

Sleep in fish models

Espinasa, L., Retaux, S., Yoshisawa, M., Heintz, C. and Balogh-Robinson, R. (2019)

Vibration Attraction Behavior expression is prevalent among caves, but variable within caves

Ditter, R.E., Snyder, A.P., Schulman, S.E. and Bracken-Grissom, H.D. (2019)

Notes on the behavior and first records of three enigmatic anchialine shrimps (Decapoda: Caridea: Barbouriidae, Palaemonidae) in the Bahamas

Blin, M. and Rétaux, S. (2019)

Voir ou sentir, l’histoire d’Astyanax mexicanus

Hernández, J., Garita-Alvarado, C.A. and Ornelas-García, C.P. (2019)

Parallel trophic morphology in cave and surface fish Astyanax mexicanus (De Filippi 1853)

Stahl, B.A., Peuß, R., McDole, B., Kenzior, A., Jaggard, J.B., Gaudenz, K., Krishnan, J., McGaugh, S.E., Duboue, E.R., Keene, A.C. and Rohner, N. (2019)

Stable transgenesis in Astyanax mexicanus using the Tol2 transposase system

Van der Weele, C.M. and Jeffery, W.R. (2019)

Cavefish increase red blood cell development and reprogram metabolism as adaptations to environmental hypoxia.

Culver, D.C. and Pipan, T. (2019)

The biology of caves and other subterranean habitats. Second edition.

Gluesenkamp, A. and McGaugh, S. (2019)

The Texas Tetra Project

Pastana, M.N.L., Bockmann, F.A. and Datovo, A. (2019)

The cephalic lateral-line system of Characiformes (Teleostei: Ostariophysi): anatomy and phylogenetic implications

Contrasted gene decay in subterranean vertebrates: insights from cavefishes and fossorial mammals

Krishnan, J., Seidel, C.W., Zhang, N., Van Campen, J., Peuß, R., Xiong, S., Kenzior, A., Li, H., Conaway, J.W. and Rohner, N. (2020)

Genome-wide analysis of cis-regulatory changes in the metabolic 1 adaptation of cavefish

Contrasted gene decay in subterranean vertebrates: insights from cavefishes and fossorial mammals

Riddle, M.R., Aspiras, A.C., Gaudenz, K., Peuß, R., Sung, J.Y., Martineau, B., Peavey, M., Box, A.C., Tabin, J.A., McGaugh, S., Borowsky, R., Tabin, C.J. and Rohner, N. (2020)

Author Correction: Insulin resistance in cavefish as an adaptation to a nutrient-limited environment

Mack, K.L., Jaggard, J.B., Persons, J.L., Passow, C.N., Stanhope, B.A., Ferrufino, E., Tsuchiya, D., Smith, S.E., Slaughter, B.D., Kowalko, J., Rohner, N., Keene, A.C. and McGaugh, S.E. (2020)

Repeated evolution of circadian clock dysregulation in cavefish populations

Ingalls, A., Merryman, S., Baumann, D.P. (2020)

Length-mass relationship and aggression of Astyanax mexicanus (Mexican cavefish) reared in a laboratory environment

Contrasted gene decay in subterranean vertebrates: insights from cavefishes and fossorial mammals

Ingalls, A., Merryman, S., Baumann, D.P. (2020)

Non-invasive measurement of cortisol in Astyanax mexicanus (Mexican tetra) as it relates to environmental stressors

Contrasted gene decay in subterranean vertebrates: insights from cavefishes and fossorial mammals

Marandel, L., Plagnes-Juan, E., Marchand, M., Callet, T., Dias, K., Terrier, F., Père, S., Vernier, L., Panserat, S. and Rétaux, S. (2020)

Nutritional regulation of glucose metabolism-related genes in the emerging teleost model mexican tetra surface fish: a first exploration

Medley, J.K., Persons, J., Peuß, R., Olsen, L., Xiong, S. and Rohner, N. (2020)

Untargeted metabolomics of the cavefish Astyanax mexicanus reveals the basis of metabolic strategies in adaptation to extreme conditions

Contrasted gene decay in subterranean vertebrates: insights from cavefishes and fossorial mammals

Jandzik, D. and Stock, D.W. (2020)

Differences in developmental potential predict the contrasting patterns of dental diversification in characiform and cypriniform fishes

Contrasted gene decay in subterranean vertebrates: insights from cavefishes and fossorial mammals

Peuss, R., Box, A.C., Chen S., Wang Y., Tsuchiya D., Persons J. L., . . . and Rohner N. (2020)

Adaptation to low parasite abundance affects immune investment and immunopathological responses of cavefish

Li, C., Chen, H., Zhao, Y., Chen, S. and Xiao, H. (2020)

Comparative transcriptomics reveals the molecular genetic basis of pigmentation loss in Sinocyclocheilus cavefishes

Contrasted gene decay in subterranean vertebrates: insights from cavefishes and fossorial mammals

McGaugh, S.E., Passow, C.N., Jaggard, J.B., Stahl, B.A. and Keene, A.C. (2020)

Unique transcriptional signatures of sleep loss across independently evolved cavefish populations.

Phelps, A.N., Luc, H.M. and Gross, J.B. (2020)

Comparative developmental expression of neural crest genes in the blind Mexican cavefish, Astyanax mexicanus

Contrasted gene decay in subterranean vertebrates: insights from cavefishes and fossorial mammals

Gimhani, N. and Atukorallaya, D. (2020)

Influence of the eye on neurocranium development; Insights from Mexican cavefish (Astyanax mexicanus)

Cao, J. and Cheng, X. (2020)

Molecular evolution and characterization of fish stathmin genes

Ma, L., Gore, A.V., Castranova, D., Shi, J., Ng, M., Tomins, K.A., van der Weele, C.M., Weinstein, B.M. and Jeffery, W.R. (2020)

A hypomorphic cystathionine ß-synthase gene contributes to cavefish eye loss by disrupting optic vasculature

Espinasa, L., Ornelas-García, C.P., Legendre, L., Rétaux, S., Best, A., Gamboa-Miranda, R., Espinosa-Pérez, H. and Sprouse, P. (2020)

Two new localities of Astyanax cavefish plus revision of its biogeography

Cutlip, C. (2020)

Gene found that causes eyes to wither in cavefish

Powers, A.K., Boggs, T.E.and Gross, J.B. (2020)

An asymmetric genetic signal associated with mechanosensory expansion in cave-adapted fish

Warren, W.C., Boggs, T.E., Borowsky, R., Carlson, B.M., Ferrufino, E., Gross, J.B., Hillier, L., Hu, Z., Keene, A.C., Kenzior, A., et al. (2020)

A chromosome level genome of Astyanax mexicanus surface fish for comparing population-specific genetic differences contributing to trait evolution

McGaugh, S.E., Kowalko, J., Duboue, E.R., Lewis, P., Franz-Odendaal, T.A., Rohner, N., Gross, J.B. and Keene, A.C. (2020)

Dark world rises: The emergence of cavefish as a model for the study of evolution, development, behavior, and disease

Terán, G.E., Benitez, M.F. and Mirande, J.M. (2020)

Opening the Trojan horse: phylogeny of Astyanax, two new genera and resurrection of Psalidodon (Teleostei: Characidae)

Rohner, N. (2020)

In the spotlight—Early career researcher

Pierre, C. (2020)

Conséquences fonctionnelles, comportementales et adaptatives d’une mutation de la MAO (MonoAmine Oxydase) chez le poisson cavernicole aveugle Astyanax mexicanus

Kowalko, J.E., Franz‐Odendaal, T.A. and Rohner, N. (2020)

Introduction to the special issue—cavefish—adaptation to the dark

Kowalko, J.E., Franz-Odendaal, T.A. and Rohner, N. (2020)

Cavefish special issue

Hernández, D., Moller, P.R., Casane, D. and García-Machado, E. (2020)

A new species of the cave-fish genus Lucifuga (Ophidiiformes, Bythitidae), from eastern Cuba

Leclercq, J., Pierre, C., Simon, V. and Blin, M. (2020)

La génétique évolutive du tétra mexicain Astyanax mexicanus

Ornelas, P., Gonzalez, E.G., Tautz, D. and Doadrio, I. (2020)

Lack of genetic differentiation between two sympatric species of Astyanax (Characidae:Teleostei) in Lake Catemaco, Mexico

Riddle, M.R., Aspiras, A.C., Damen, F., Hutchinson, J.N., Chinnapen, D.J.F., Tabin, J. and Tabin, C.J. (2020)

Genetic architecture underlying changes in carotenoid accumulation during the evolution of the blind Mexican cavefish, Astyanax mexicanus

Jaggard, J.B., Lloyd, E., Yuiska, A., Patch, A., Fily, Y., Kowalko, J.E., Appelbaum, L., Duboue, E.R. and Keene, A.C. (2020)

Cavefish brain atlases reveal functional and anatomical convergence across independently evolved populations

Jeffery, W.R. (2020)

Astyanax surface and cave fish morphs

Pierre, C., Pradère, N., Froc, C., Ornelas-García, P., Callebert, J. and Rétaux. S. (2020)

A mutation in monoamine oxidase (MAO) affects the evolution of stress behavior in the blind cavefish Astyanax mexicanus

Gallman, K., Fortune, E., Rivera, D. and Soares, D. (2020)

Differences in behavior between surface and cave Astyanax mexicanus may be mediated by changes in catecholamine signaling

Chin, J.S.R., Loomis, C.L., Albert, L.T., Medina‐Trenche, S., Kowalko, J., Keene, A.C. and Duboué, E.R. (2020)

Analysis of stress responses in Astyanax larvae reveals heterogeneity among different populations

Franz-Odendaal, T.A. (2020)

In the spotlight—Established researcher

Kowalko, J.E. (2020)

In the spotlight—Early career researcher

Espinasa, L., Ornelas-García, C.P., Legendre, L., Rétaux, S., Best, A., Gamboa-Miranda, R., Espinosa-Pérez, H. and Sprouse, P. (2020)

Discovery of two new Astyanax cavefish localities leads to further understanding of the species biogeography

Mercado-Silva, N., Ornelas-Garcia, C.P., Schmitter-Soto, J.J., Gidmark, N.J. and Simons, A.M. (2020)

Characidae: Characins

Sifuentes‐Romero, I., Ferrufino, E., Thakur, S., Laboissonniere, L.A., Solomon, M., Smith, C.L., Keene, A.C., Trimarchi, J.M. and Kowalko, J.E. (2020)

Repeated evolution of eye loss in Mexican cavefish: Evidence of similar developmental mechanisms in independently evolved populations

Minchin, J.E.N. (2020)

Adaptation of blind cavefish to nutrient poor environments: uncovering diverse new mechanisms that regulate body fat levels

Powers, A.K., Berning, D.J. and Gross, J.B. (2020)

Parallel evolution of regressive and constructive craniofacial traits across distinct populations of Astyanax mexicanus cavefish.

Gross, J.B. and Powers, A.K. (2020)

A natural animal model system of craniofacial anomalies: The blind Mexican cavefish

Sears, C.R., Boggs, T.E. and Gross, J.B. (2020)

Dark‐rearing uncovers novel gene expression patterns in an obligate cave‐dwelling fish

Krishnan, J., Persons, J.L., Peuß, R., Hassan, H., Kenzior, A., Xiong, S., Olsen, L., Maldonado, E., Kowalko, J.E. and Rohner, N. (2020)

Comparative transcriptome analysis of wild and lab populations of Astyanax mexicanus uncovers differential effects of environment and morphotype on gene expression

Emam, A., Yoffe, M., Cardona, H. and Soares, D. (2020)

Retinal morphology in Astyanax mexicanus during eye degeneration

Warren, M.L. and Burr, B.M. (2020)

Freshwater fishes of North America. Volume 2 Characidae to Poeciliidae

Paz, A., McDole, B., Kowalko, J.E., Duboue, E.R. and Keene, A.C. (2020)

Evolution of the acoustic startle response of Mexican cavefish

Torres-Paz, J. and Rétaux, S. (2020)

Embryological manipulation to probe early evo-devo in the fish Astyanax mexicanus

Bilandžija H., Hollifield B., Steck M., Meng G., Ng M., Koch A. D, Gračan, R., Ćetković, H., Porter, M.L., Renner, K.J. and Jeffery, W. (2020)

Phenotypic plasticity as a mechanism of cave colonization and adaptation

Ma, L., Ng, M., van der Weele, C.M., Yoshizawa, M. and Jeffery, W.R. (2020)

Dual roles of the retinal pigment epithelium and lens in cavefish eye degeneration

Kowalko, J. (2020)

Utilizing the blind cavefish Astyanax mexicanus to understand the genetic basis of behavioral evolution

Peuß, R., Box, A.C., Chen, S., Wang, Y., Tsuchiya, D., Persons, J.L., Kenzior, A., Maldonado, E., Krishnan, J., Scharsack, J.P., Slaughter, B.D. and Rohner, N. (2020)

Adaptation to low parasite abundance affects immune investment and immunopathological responses of cavefish.

Ma, L., Ng, M., Shi, J., Gore, A.V., Castranova, D., Weinstein, B.M. and Jeffery, W.R. (2020)

Evolutionary changes in left-right visceral asymmetry in Astyanax cavefish

Contrasted gene decay in subterranean vertebrates: insights from cavefishes and fossorial mammals

Maldonado, E., Rangel‐Huerta, E., Rodriguez‐Salazar, E., Pereida‐Jaramillo, E. and Martínez‐Torres, A. (2020)

Subterranean life: Behavior, metabolic, and some other adaptations of Astyanax cavefish

Blin, M., Fumey, J., Lejeune, C., Policarpo, M., JLeclercq, J., Père, S., Torres-Paz, J., Pierre, C., Imarazene, B. and Rétaux, S. (2020)

Diversity of olfactory responses and skills in Astyanax mexicanus cavefish populations inhabiting different caves

Chin, J.S.R., Loomis, C.L., Albert, L.T., Medina-Trenche, S., Kowalko, J., Keene, A.C. and Duboué, E.R. (2020)

Analysis of stress responses in Astyanax larvae reveals heterogeneity among different populations

Yoffe, M., Patel, K., Palia, E., Kolawole, S., Streets, A. Haspel, G. and Soares, D. (2020)

Morphological malleability of the lateral line allows for surface fish (Astyanax mexicanus) adaptation to cave environments

Riddle, M.R., Damen, F., Aspiras, A., Tabin, J.A., McGaugh, S. and Tabin, C.J. (2020)

Evolution of gastrointestinal tract morphology and plasticity in cave-adapted Mexican tetra, Astyanax mexicanus

Pierre, C., Pradère, N., Froc, C., Ornelas-García, P., Callebert, J. and Rétaux, S. (2020)

A mutation in monoamine oxidase (MAO) affects the evolution of stress behavior in the blind cavefish Astyanax mexicanus

Wilkens, H. (2020)

The role of selection in the evolution of blindness in cave fish

Mao, T.-R., Liu, Y.-W., Meegaskumbura, M., Yang, J., Ellepola, G., Senevirathne, G., Fu, C.-H., Gross, J.B. and Pie, M.R. (2020)

Evolution in Sinocyclocheilus cavefish is marked by rate shifts, reversals and origin of novel traits

Mao, T.-R., Liu, Y.-W., Meegaskumbura, M., Yang, J., Ellepola, G., Senevirathne, G., Fu, C.-H., Gross, J.B. and Pie, M.R. (2020)

Evolution in Sinocyclocheilus cavefish is marked by rate shifts, reversals and origin of novel traits

Ditter, R.E., Mejía-Ortíz, L.M. and Bracken-Grissom, H.D. (2020)

Anchialine adjustments: an updated phylogeny and classification for the family Barbouriidae Christoffersen 1987 (Decapoda: Caridea)

Patch, A., Paz, A., Holt, K., Duboue, E., Kowalko, J., Keene, A. and Fily, Y. (2020)

Analysis of social swimming dynamics in the Mexican cavefish

Ditter, R.E., Mejía-Ortíz, L.M. and Bracken-Grissom, H.D. (2020)

Anchialine adjustments: an updated phylogeny and classification for the family Barbouriidae Christoffersen 1987 (Decapoda: Caridea)

Krishnan, J., Seidel, C.W., Zhang, N., VanCampen, J., Peuss, R., Xiong, S., Kenzior, A., Li, H., Conaway, J.W. and Rohner, N. (2021)

RNA-Seq Analysis of liver cells of Astyanax mexicanus

Espinasa, L., Heintz, C., Rétaux, S., Yoshisawa, M., Agnès, F., Ornelas-Garcia, P. and Balogh-Robinson, R. (2021)

Vibration Attraction Response (VAB) is a plastic trait in Blind Mexican tetra (Astyanax mexicanus), variable within subpopulations inhabiting the same cave

Agnès, F., Torres-Paz, J., Michel, P. and Rétaux, S. (2021)

A 3D molecular map of the cavefish neural plate illuminates eyefield organization and its borders in vertebrates

Imarazene, B., Beille, S., Jouanno, E., Branthonne, A., Thermes, V., Thomas, M., Herpin, A., Rétaux, S. and Guiguen, Y. (2021)

Primordial germ cell migration and histological and molecular characterization of gonadal differentiation in Pachón cavefish Astyanax mexicanus.

Iwashita, M. and Yoshizawa, M. (2021)

Social-like responses are inducible in asocial Mexican cavefish despite the exhibition of strong repetitive behaviour

Oliva, C., Hinz, N.K., Robinson, W., Barrett Thompson, A.M., Booth, J., Crisostomo, L.M., Zanineli, S., Tanner, M., Lloyd, E., O’Gorman, M., McDole, B., Paz, A., Kozol, R. et al. (2021)

Characterizing the genetic basis of trait evolution in the Mexican cavefish

Policarpo, M., Laurenti, P., García-Machado, E., Metcalfe, C., Rétaux, S. and Casane, D. (2021)

Genomic evidence that blind cavefishes are not wrecks of ancient life

Jandzik, D. and Stock, D.W. (2021)

Differences in developmental potential predict the contrasting patterns of dental diversification in characiform and cypriniform fishes

Potts, H.G., Stockdale,W.T. and Mommersteeg, M.T.M. (2021)

Unlocking the secrets of the regenerating fish heart: Comparing regenerative models to shed light on successful regeneration.

Eschmeyer, W.N. and Van der Laan, R. and Fricke, R. (2021)

Eschmeyer's Catalog of Fishes: Genera, Species, References

Torres-Paz, J. and Retaux, S. (2021)

Pescoids and chimeras to probe early evo-devo in the fish Astyanax mexicanus

Borowsky, R. (2021)

Evolution: The genetics of trait evolution in cavefish

Pérez-Rodríguez, R., Esquivel-Bobadilla, S., Orozco-Ruíz, A.M., Olivas-Hernández, Jé.L. and García-De León, F.J. (2021)

Genetic structure and historical and contemporary gene flow of Astyanax mexicanus in the Gulf of Mexico slope: a microsatellite-based analysis

Garita-Alvarado, C.A., Garduño-Sánchez, M., Barluenga, M. and Ornelas-García, C.P. (2021)

Genetic and ecomorphological divergence between sympatric Astyanax morphs from Central America

Zhao, H., Li, H., Du, J., Di Mauro, G., Lungu-Mitea, S., Geyer, N., Vallone, D., Bertolucci, C. and Foulkes, N.S. (2021)

Regulation of ddb2 expression in blind cavefish and zebrafish reveals plasticity in the control of sunlight-induced DNA damage repair

Warren, W.C., Boggs, T.E., Borowsky, R., Carlson, B.M., Ferrufino, E., Gross, J.B., Hillier, L., Hu, Z., Keene, A.C., Kenzior, A. and Kenzior, A. and Kowalko, J.E. (2021)

A chromosome-level genome of Astyanax mexicanus surface fish for comparing population-specific genetic differences contributing to trait evolution

Gimhani, N. and Atukorallaya, D. (2021)

Comparative analysis of the parasphenoid bone development in Mexican tetra (Astyanax mexicanus)

Devos, L., Agnès, F., Edouard, J., Simon, V., Legendre, L., El Khallouki, N., Barbachou S., Sohm, F. and Rétaux, S. (2021)

Eye morphogenesis in the blind Mexican cavefish

Zhao, Y., Zhang, C. and Proudlove, G.S. (2021)

Fishes of the Genus Sinocyclocheilus (Cypriniformes: Cyprinidae) in China. Systematics, biology, biogeography and cave adaptation

Zhao, Y., Zhang, C. and Proudlove, G.S. (2021)

Fishes of the Genus Sinocyclocheilus (Cypriniformes: Cyprinidae) in China. Systematics, biology, biogeography and cave adaptation

Tanvir, Z., Rivera, D., Severi, K.E., Haspel, G. and Soares, D. (2021)

Evolutionary and homeostatic changes in morphology of visual dendrites of Mauthner cells in Astyanax blind cavefish.

Torres-Paz, J. and Rétaux, S. (2021)

Pescoids and chimeras to probe early evo-devo in the fish Astyanax mexicanus

Ma, L., Ng, M., Shi, J., Gore, A.V., Castranova, D., Weinstein, B.M. and Jeffery, W.R. (2021)

Maternal control of visceral asymmetry evolution in Astyanax cavefish

Ma, L., Dessiatoun, R., Shi, J. and Jeffery, W.R. (2021)

Incremental temperature changes for maximal breeding and spawning in Astyanax mexicanus.

Imarazene, B., Du, K., Beille, S., Jouanno, E., Feron, R., Pan, Q., Torres-Paz J., Lopez-Roques, C., Castinel,A., Gil, L., Kuchly, C., Donnadieu, C., Parrinello,H., Journot, L., Cabau, C., Zahm, M., Klopp, C., Pavlica, T., Al-Rikabi, A., Liehr, T., Sima (2021)

A supernumerary ‘‘B-sex’’ chromosome drives male sex determination in the Pachon cavefish, Astyanax mexicanus

Riddle, M.R., Aspiras, A., Damen, F., McGaugh, S., Tabin, J.A. and Tabin, C.J. (2021)

Genetic mapping of metabolic traits in the blind Mexican cavefish reveals sex‑dependent quantitative trait loci associated with cave adaptation

Mack, K.L., Jaggard, J.B., Persons, J.L., Roback, E.Y., Passow, C.N., Stanhope, B.A., Ferrufino, E., Tsuchiya, D. Smith, S.E., Slaughter, B.D. et al. (2021)

Repeated evolution of circadian clock dysregulation in cavefish populations

Wilkens, H. (2021)

Variability and the primacy of the genotype

O'Gorman, M., Thakur, S., Imrie, G., Moran, R.L., Choy, S., Sifuentes-Romero, I., Bilandžija, H., Renner, K.J., Duboué, E., Rohner, N., McGaugh, S.E., Keene, A.C. and Kowalko, J.E. (2021)

Pleiotropic function of the oca2 gene underlies the evolution of sleep loss and albinism in cavefish

Garita-Alvarado, C.A., Garduño-Sánchez, M., Barluenga, M. and Ornelas-García, C.P. (2021)

Genetic and ecomorphological divergence between sympatric Astyanax morphs from Central America

Broadfoot, M.V. (2021)

Stowers Institute amasses menagerie of unconventional organisms to study health and disease

Kistner, A.R., Enriquez, M.S., Michels, N.O. and Mensinger, A.F. (2021)

Behavioral differences in sound detection in recently diverged cave and surface forms of Astyanax mexicanus

Iwashita, M. and Yoshizawa, M. (2021)

Social-like responses are inducible in asocial Mexican cavefish despite the exhibition of strong repetitive behavior

Li, R., Wang, X., Bian, C., Gao, Z., Zhang, Y., Jiang, W., Wang, M., You, X., Cheng, L., Pan, X., Yang, J. and Shi, Q. (2021)

Whole-genome sequencing of Sinocyclocheilus maitianheensis reveals phylogenetic evolution and immunological variances in various Sinocyclocheilus fishes

Li, R., Wang, X., Bian, C., Gao, Z., Zhang, Y., Jiang, W., Wang, M., You, X., Cheng, L., Pan, X., Yang, J. and Shi, Q. (2021)

Whole-genome sequencing of Sinocyclocheilus maitianheensis reveals phylogenetic evolution and immunological variances in various Sinocyclocheilus fishes

Boggs, T. and Gross, J. (2021)

Reduced oxygen as an environmental pressure in the evolution of the blind Mexican cavefish

Moran, R.L., Jaggard, J.B., Roback, E.Y., Rohner, N., Kowalko, J.E., Ornelas-García, C.P., McGaugh, S.E. and Keene, A.C. (2021)

Hybridization underlies localized trait evolution in cavefish

Devos, L., Agnès, F., Edouard, J., Simon, V., Legendre, L., El Khallouki, N., Barbachou, S., Sohm, F. and Rétaux, S. (2021)

Eye morphogenesis in the blind Mexican cavefish

Wilson, E.J., Tobler, M., Riesch, R., Martínez‑García, L. and García‑De León, F.J. (2021)

Natural history and trophic ecology of three populations of the Mexican cavefish, Astyanax mexicanus

Xiong, S., Wang, W., Kenzior, A., Olsen, L., Krishnan, J., Persons, J., Medley, K., Peuß, R., Wang, Y., Chen, S., Zhang, N., Thomas, N., Miles, J.M., Sánchez Alvarado, A. and Rohner, N. (2021)

Enhanced lipogenesis through Pparγ helps cavefish adapt to food scarcity

Olsen, L., Thum, E. and Rohner, N. (2021)

Lipid metabolism in adaptation to extreme nutritional challenges

Moran, R.L., Jaggard, J.B., Roback, E.Y., Kenzior, A., Rohner, N., Kowalko, J.E., Ornelas-García, C.P., McGaugh, S.E. and Keene, A.C. (2022)

Hybridization underlies localized trait evolution in cavefish

Perry, A., McGaugh, S.E., Keene, A.C. and Blackmon, H. (2022)

CaveCrawler

Iwashita, M., Tran, A., Wong, M., Lee, R. and Yoshizawa, M. (2022)

Metabolic shift toward ketosis in asocial cavefish increases social-like collective behavior

Retaux, S., Attia, J., Blin, M., Casane, D., Espinasa, L., Hyacinthe, C., Imarazene, B., Leclercq, J., Legendre, L., Père, S., Pierre, C., Policarpo, M., Torres-Paz, J., and Simon, V. (2022)

Ten years of cavefish field studies: what have we learned?

Agnès, F., Torres-Paz, J., Michel, O. and Rétaux, S. (2022)

A 3D molecular map of the cavefish neural plate illuminates eye-field organization and its borders in vertebrates

Boggs, T. and Gross, J.B. (2022)

Evidence of adaptation to hypoxic subterranean waters in Astyanax mexicanus.

van der Weele, C. and Jeffery, W.R. (2022)

Cavefish develop more erythrocytes and overexpress hypoxia Inducible genes as a response to hypoxic environments

Nwosu, U. (2022)

Regulation of activity patterns in Astyanax mexicanus cavefifish

Rodriguez-Morales, R., Gonzalez-Lerma, P., Yuiska, A., Heon Han, J., Guerra, Y., Crisostomo, L., Keene, A.C., Duboue, E.R. and Kowalko, J.E. (2022)

Convergence on reduced aggression through shared behavioral traits in multiple populations of Astyanax mexicanus

Pennington, A. (2022)

Bioinformatics analyses of new genes of focus in the research of autism with dogs, fats, and a variety of other model organisms

Olsen, L., Gluesenkamp, A., Mager, E., Coughlin, D. and Rohner, N. (2022)

Metabolic reprogramming underlies cavefish muscular endurance despite selective loss of muscle mass and contractility

Oliva, C., Hinz, N.K., Robinson, W., Barrett Thompson, A.M., Booth, J., Crisostomo, L.M., Zanineli, S., Tanner, M., Lloyd, E., O’Gorman, M., McDole, B., Paz, A., Kozol, R. et al. (2022)

Characterizing the genetic basis of trait evolution in the Mexican cavefish

Yoshizawa, M., Balmilero-Unciano, R., Valdez, C., Lactaoen, K., Kato, J., Ito, M., Clarke, K. and Iwashita, M. (2022)

Plasticity in the expression of social affinity under the environmental interventions: spatial and dietary

Duboue, E.R., Kowalko, J.E. and Keene, A.C. (2022)

Course‐based undergraduate research experiences (CURES) as a pathway to diversify science

Kuhn, J., Azari, S. and Volkoff, H. (2022)

Effects of temperature on food intake and the expression of appetite regulators in three Characidae fish: The black-skirted tetra (Gymnocorymbus ternetzi), neon tetra (Paracheirodon innesi) and Mexican cavefish (Astyanax mexicanus)

Paz, A., Holt, K., Duboué, E., Fily, Y. and Kowalko, J. (2022)

The developmental trajectory of social behavior in the Mexican cavefish

Callier, V. (2022)

Blind Cave Fish May Trade Color for Energy. Pasty cave fish seem to repurpose a melanin-making molecule to better survive famine

Vogt, G. (2022)

Epigenetics and phenotypic plasticity in animals

Rodríguez-Morales, R., Gonzalez, P., Guerra, Y., Crisostomo, L., Pileggi, B., Kimmel, A. and Kowalko, J. (2022)

Evolution of aggressive behaviors in the blind Mexican cavefish

Lesku, J.A. and Rattenborg, N.C. (2022)

The missing cost of ecological sleep loss

Leal, F. and Tabin, C.J. (2022)

Genetic basis of metabolic specializations in the Mexican cavefish

Hyacinthe, C., Attia, J., Schutz, E., Casane, D. and Rétaux, S. (2022)

Acoustic signatures in cavefish populations inhabiting different caves

Berning, D. (2022)

Developmental timing and genetic architecture of external taste expansion in the blind Mexican cavefish, Astyanax mexicanus

Roberts, R.J.B., Pop, S. and Prieto-Godino, L.L. (2022)

Evolution of central neural circuits: state of the art and perspectives

Lloyd, E., Chouuk, B., Conith, A., Albertson, R.C. and Keene, A.C. (2022)

Investigating the evolution and developmental plasticity of sleep and activity patterns in Lake Malawi cichlids

Kozol, R.V., Conith, A.J., Yuiska, A., Cree-Newman, A., Tolentino, B., Banesh, K., Paz, A., Lloyd, E., Kowalko, J.E., Keene, A.C., R. Albertson, C. and Duboue, E.R. (2022)

A brain-wide anatomical analysis suggests structural coevolution of distinct neuroanatomical modules

Soares, D. (2022)

Evolutionary insights and constraints from the nervous systems and behavior of cavefish

Fily, Y., Patch, A., Paz, A., Holt, K.J., Duboué, E.R., Keene, A.C. and Kowalko, J.E. (2022)

Evolution of schooling and exploration strategies in the Mexican tetra fish

Tobler, M. (2022)

Extreme environments, natural complexity, and the predictability of evolution

Olsen, L., Levy, M., Medley, J.K., Hassan, H., Alexander, R., Wilcock, E., Yi, K., Florens, L., McKinney, S., Peuß, R., Persons, J., Kenzior, A., Maldonado, E., Gluesenkamp, A. et al. (2022)

Metabolic reprogramming underlies cavefish muscular endurance despite loss of muscle mass and contractility

Espinasa, L., Diamant, R., Mesquita, M., Lindquist, J.M., Powers, A.M. and Helmreich, J. (2022)

Laterality in cavefish: Left or right foraging behavior in Astyanax mexicanus

Gross, J.B., and Powers, A.K. (2022)

Reinterpreting the work of Charles Breder: Sensory neuromasts and orbital skeleton variation in eyeless Astyanax cavefish

Lunsford, E.T., Paz, A., Keene, A.C. and Liao, J.C. (2022)

Evolutionary convergence of a neural mechanism in the cavefish lateral line system

Sumbre, G. (2022)

Principles of functional circuit connectivity: Insights from the zebrafish optic tectum

Lei, F., Xu, M., Ji, Z., Rose, K.A., Zakirov, V. and Bisset, M. (2022)

Swimming behavior and hydrodynamics of the Chinese cavefish Sinocyclocheilus rhinocerous and a possible role of its head horn structure

Porfiri, M., Zhang, P. and Peterson, S.D. (2022)

Hydrodynamic model of fish orientation in a channel flow

Mogdans, J. (2022)

The processing of hydrodynamic stimuli with the fish lateral line system

Lunsford, E.T. (2022)

Mechanisms and evolution of sensory feedback and signal transduction in lateral line hair cells

Thakur, S., Tuyet Tra, N. and Cummings, M. (2022)

Understanding coping styles in a fish species with alternative reproductive tactics

Reyes Pérez, R.I. (2022)

Evolutionary development of skull morphology in the cavefish Astyanax mexicanus

Hendrickson, D. (2022)

Not yet known

Kemeny, R. (2022)

Blind Mexican cave fish are developing cave-specific accents. The Mexican tetra has evolved to live in a number of dark caves – and now we know that the fish in each cave use clicks to communicate in distinct ways

Stanton, D., Justin, H.S. and Reitzel, A.M. (2022)

Step in time: Conservation of circadian clock genes in animal evolution

Fernandes, V.F.L., Espinasa, L., Glaser, Y., Iwashita, M., Sadowski, P. and Yoshizawa, M. (2022)

Diversity of the left-right asymmetry evolution in the sensory system and the behavior output of Astyanax mexicanus

Smith, D.G. and Bowman, I.A. (2022)

The long journey of Curt Kosswig

Silva. P., Zavareh, P.A. and Atukorala, D. (2022)

Teleost fish as model animals to understand alcohol teratology

Pierre, C., Callebert, J., Launay, J.M. and Rétaux, S. (2022)

The enzymatic and neurochemical outcomes of a mutation in Mexican cavefish MAO reveal teleost-specific aspects of brain monoamine homeostasis

Powers, A.K., Hyacinthe, C., Riddle, M., Kim, Y.K., Amaismeier, A., Thiel, K., Martineau, B., Ferrante, E., Moran, R., McGaugh, S., Boggs, T., Gross, J.B. and Tabin, C.J. (2022)

Genetic mapping of craniofacial traits in the Mexican tetra reveals loci associated with bite differences between cave and surface fish

Martik, M. (2022)

Reactivation of the embryonic neural crest gene program during zebrafish cardiac regeneration

Lunsford, E.T., Paz, A., Keene, A.C. and Liao, J.C. (2022)

Evolutionary convergence of a neural mechanism in the cavefish lateral line system

Borowsky, R. and Chen, H. (2022)

Mutagenesis alters sperm swimming velocity in Astyanax

Riddle, M., Guerra, D.P., Aspiras, A., Chinnapen, D., Damen, F., Hutchinson, J.N., McGaugh, S., Tabin, J. and Tabin, C. (2022)

Evolution of provitamin A assimilation in Astyanax mexicanus

Krishnan, J., Seidel, C.W., Zhang, N., Singh, N.P., VanCampen, J., Peuß, R., Xiong, S., Kenzior, A., Li, H., Conaway. J.W. and Rohner, N. (2022)

Genome-wide analysis of cis-regulatory changes underlying metabolic adaptation of cavefish

Lesser, E. (2022)

Cavefish focus on which way the water flows

Leclercq, J. (2022)

Evolution of the eye in Astyanax mexicanus : contribution of maternal and early developmental regulations

Krishnan, J., Seidel, C.W., Zhang, N., Singh, N.P., Van Campen, J., Peuß, R., Xiong, S., Kenzior, A., Li, H., Conaway, J.W. and Rohner, N. (2022)

Genome-wide analysis of cis-regulatory changes underlying metabolic adaptation of cavefish

Kozol, R.A., Conith, A.J., Yuiska, A., Cree-Newman, A., Tolentino, B., Banesh, K., Paz, A., Lloyd, E., Kowalko, J.E., Keene, A.C., Albertson, R.C. and Duboue, E.R. (2022)

Global and discrete mechanisms of evolution have transformed the shape and volume of cavefish brain regions

Medley, J.K., Persons, J., Biswas, T., Olsen, L., Peuß, R., Krishnan, J., Xiong, S. and Rohner, N. (2022)

The metabolome of Mexican cavefish shows a convergent signature highlighting sugar, antioxidant, and ageing-related metabolites

Rétaux, S. (2022)

La boîte à outils de l’évolution développementale ou comment les poissons cavernicoles mexicains ont perdu leurs yeux

Lloyd, E., McDole, B., Privat, M., Jaggard, J.B., Duboue, E.R., Sumbre, G. and Keene, A.C. (2022)

Blind cavefish retain functional connectivity in the tectum despite loss of retinal input

Garduno-Sanchez, M., Hernandez-Lozano, J., Moran, R., Miranda-Gamboa, R., Gross, J., Rohner, N., Elliott, W.R., Miller, J., Lozano-Vilano, L., McGaugh, S. and Ornelas-Garcia, C. (2022)

Phylogeographic relationships and morphological evolution between cave and surface Astyanax mexicanus populations (De Fillipi 1853) (Actinopterygii, Characidae)

Leclercq, J., Torres-Paz, J. and Rétaux, S. (2022)

Evolution of gene expression regulation in blind cavefish embryos

Lloyd, E., McDole, B., Privat, M., Jaggard, J.B., Duboué, E., Sumbre, G. and Keene, A. (2022)

Blind cavefish retain functional connectivity in the tectum despite loss of retinal input

Agnès, F., Torres-Paz, J., Michel, P. and Rétaux, S. (2022)

A 3D molecular map of the cavefish neural plate illuminates eye-field organization and its borders in vertebrates

Krishnan, J., Wang, Y., Kenzior, O., Hassan, H., Olsen, L., Tsuchiya, D., Kenzior, A., Peuß, R., Xiong, S., Wang, Y., Zhao, C. and Rohner, N. (2022)

Liver-derived cell lines from cavefish Astyanax mexicanus as an in vitro model for studying metabolic adaptation

Bhatia, V., de Jesus, V.C., Shaik, F.A., Jaggupilli, A., Singh, N., Chelikani, P. and Atukorallaya, D. (2022)

Extraoral expression and characterization of bitter taste receptors in Astyanax mexicanus (Mexican tetra fish)

Powers, A., Berning, D., Boggs, T., Hamm, A. and Gross, J. (2022)

Towards an understanding of the developmental and genetic attributes of cranial variation in Astyanax cavefish

Rodríguez-Ballesteros, V., Mendoza-Garfias, B., Ulloa-Arvizu, R., Balcazar, A. and Ornelas-García, C.P. (2022)

Morphological description of gametes in cave and surface populations of Astyanax mexicanus (De Filippi, 1853)

Rodriguez-Morales, R., Gonzalez-Lerma, P., Yuiska, A., Heon Han, J., Guerra, Y., Crisostomo, L., Keene, A.C., Duboue, E.R. and Kowalko, J. (2022)

Convergence on reduced aggression through shared behavioral traits in multiple populations of Astyanax mexicanus

Fernandes, V.F.L., Glaser, Y., Iwashita, M. and Yoshizawa, M. (2022)

Evolution of left–right asymmetry in the sensory system and foraging behavior during adaptation to food‑sparse cave environments

Berning, D. and Gross, J.B. (2022)

Developmental timing and genetic architecture of external taste expansion in the Mexican tetra, Astyanax mexicanus

Powers, A.K and Tabin, C. (2022)

The genetic basis underlying jaw size differences in cavefish

Enriquez, M.S. (2022)

Investigating rapid divergence of sensory systems between satellite populations of the Mexican tetra (Astyanax mexicanus)

Goes, C.A.G., dos Santos, R.Z., Aguiar, W.R.C., Alves, D.C.V., Silva, D.M.Z.dA., Foresti, F., Oliveira, C., Utsunomia, R. and Porto-Foresti, F. (2022)

Revealing the satellite DNA history in Psalidodon and Astyanax Characid fish by comparative satellitomics

Espinasa, L., Collins, E., Ornelas García, C.P., Rétaux, S., Rohner, N. and Rutkowski, J. (2022)

Divergent evolutionary pathways for aggression and territoriality in Astyanax cavefish

Xiong, S., Wang, W., Kenzior, A., Olsen, L., Krishnan, J., Persons, J., Medley, K., Peuß, R., Wang, Y., Chen S., Zhang, N., Thomas, N., Miles, J.M., Sanchez Alvarado A. and Rohner, N. (2022)

Enhanced lipogenesis through Ppary helps cavefish adapt to food scarcity

Legendre, L., Rode, J., Germon, I., Pavie, M., Quiviger, C., Policarpo, M., Leclercq, J., Père, S., Fumey, J., Hyacinthe, C., Ornelas-García, P., Espinasa, L., Rétaux, S. and Casane, D. (2022)

Genetic identification and reiterated captures suggests that the Astyanax mexicanus El Pachón cavefish population is closed and declining

Jeffery, W.R. Ma, L., Ng, M., Shi, J. and Gore, A.V. (2022)

Control of visceral asymmetry in Astyanax development: Sonic Hedgehog and the left-right organizer

Agnes, F., Torres-Paz, J., Michel, P. and Rétaux, S. (2022)

A 3D molecular map of the cavefish neural plate illuminates eyefield organization and its borders in vertebrates

Potts, H.G., Lemieux, M.E., Rice, E.S., Warren,W., Choudhury, R.P. and Mommersteeg, M.T.M. (2022)

Discordant genome assemblies drastically alter the interpretation of single-cell RNA sequencing data which can be mitigated by a novel integration method

Choy, S., Polyakov, E., Thakur, S., Lloyd, E., Keene, A. and Kowalko, J. (2022)

Uncovering the role of oca2 in the evolution of prey capture in cavefish

Espinasa, L. and Diamant, R. (2022)

Laterality in foraging behavior, reproductive seasonality, and other results from several multi-year, longitudinal studies in the field

Maderspacher, F. (2022)

White, fat and blind — Economy and evolution in caves

Hutton, P., Rodríguez-Morales, R., Ferrufino, E., Lloyd, E., Dubuoé, E.R., Kowalko, J.E. and Keene, A.C. (2022)

Preliminary data from a functional screen reveals multiple sleep-regulating genes in A. mexicanus

Moran, R.L., Jaggard, J.B., Roback, E.Y., Kenzior, A., Rohner, N., Kowalko, J.E., Ornelas-García, C.P., McGaugh, S.E. and Keene, A.C. (2022)

Hybridization underlies localized trait evolution in cavefish

Lunghi, E. and Bilandžija, H. (2022)

Average telomere length in cave vs surface Astyanax mexicanus

Perry, A., McGaugh, S.E., Keene, A.C. and Blackmon, H. (2022)

CaveCrawler: an interactive analysis suite for cavefish bioinformatics

Hyacinthe, C. and Tabin, C. (2022)

Evolution of temperature preference in Astyanax mexicanus

Wilson, E.J., Tobler, M., Riesch, R., Martínez-García, L. and García-De León, F.J. (2022)

Natural diet of three populations of the Mexican cavefish, Astyanax mexicanus

Rodriguez-Santiago, M., Jordan, A. and Hofmann, H.A. (2022)

Neural activity patterns differ between learning contexts in a social fish

Shafer, M.E.R., Sawh, A.N. and Schier, A.F. (2022)

Gene family evolution underlies cell-type diversification in the hypothalamus of teleosts

Schartl, M. (2022)

Sex determination in the Pachón cavefish, Astyanax mexicanus, by B-chromosomes

Santacruz, A., Hernández-Mena, D., Miranda-Gamboa, R.A., Pérez-Ponce de León, G. and Ornelas-Garcíai, P. (2022)

Host-parasite interactions after niche change: the macroparasite diversity in the Mexican cavefish Astyanax mexicanus

Espinasa, L., Rohner, N. and Rétaux, S. (2022)

Reproductive seasonality of Astyanax mexicanus cavefish

Boggs, T.E., Friedman, J.S. and Gross, J.B. (2022)

Alterations to cavefish red blood cells provide evidence of adaptation to reduced subterranean oxygen

Patch, A., Paz, A., Holt, K.J., Duboué, E.R., Keene, A.C., Kowalko, J.E. and Fily, Y. (2022)

Kinematic analysis of social interactions deconstructs the evolved loss of schooling behavior in cavefish

Tanvir, Z., Rivera, D., Severi, K.E., Haspel, G. and Soares, D. (2022)

Evolutionary and homeostatic changes in morphology of visual dendrites of Mauthner cells in Astyanax blind cavefish

Rice, E. Warren, W.C., Carroll, R., Keene, A. and Rohner, N. (2022)

The evolution of structural change along a surface to cavefish genome trajectory

Baratti, G., Potrich, D., Lee, S.A., Morandi-Raikova, A. and Sovrano, V.A. (2022)

The geometric world of fishes: A synthesis on spatial reorientation in Teleosts

Leclercq, J., Torres-Paz, J., Policarpo, M., Agnès, F. and Rétaux, S. (2022)

Evolution of the regulation of developmental gene expression in blind Mexican cavefish

Perry, A. McGaugh, S.E., Keene, A.C. and Blackmon, H. (2022)

CaveCrawler: An interactive analysis suite for cavefish bioinformatics

Krishnan, J., Wang, Y., Kenzior, O., Huzaifa, H., Olsen, L., Tsuchiya, D., Wang, Y., Zhao, C. and Rohner, N. (2022)

Liver-derived cell lines from cavefish Astyanax mexicanus as an in vitro model for studying metabolic adaptation

Jeffery, W. (2022)

Environmental hypoxia is a driver of Sonic Hedgehog-dependent troglomorphic evolution in Astyanax cavefish

Biswas, T., Paulson, A., Hall, K, and Rohner, N. (2022)

Fish(ing) in the Hi(gh)-C(sea)

Baumann, D.P. and Ingalls, A. (2022)

Mexican tetra (Astyanax mexicanus): biology, husbandry, and experimental protocols

Páscoa, I., Fonseca, E., Ferraz, R., Machado, A.M., Conrado, F., Ruivo, R., Cunha, I. and Castro, L.F.C. (2022)

The preservation of PPARg genome duplicates in some Teleost tineages: Insights into lipid metabolism and xenobiotic exploitation

Bronner, M. (2022)

Not yet known

van der Weele C.M. and Jeffery, W.R. (2022)

Cavefish cope with environmental hypoxia by developing more erythrocytes and overexpression of hypoxia-inducible genes

Espinasa, L. and Lewis, K.A. (2023)

Eye convergence is evoked during larval prey capture (LPC) without visual stimulus and in blind cavefish

Rajendran, N., Deng, F., Wang, Y., Kenzior, O., Krishnan, J., Biswas, T., Parmely, T., Rohner, N., Zhao, C. (2023)

Establishment, long-term maintenance, and characterization of primary liver cells from Astyanax mexicanus

Espinasa, L. and Pech, A. (2023)

Biogeographical affinities of the aquatic community of Refugio Cave, a newly discovered Astyanax cave

Garduño-Sánchez, M., Hernández-Lozano, J., Moran, R.L., Miranda-Gamboa, R., Gross, J.B., Rohner, N., Elliott, W.R., Miller, J., Lozano-Vilano, L., McGaugh, S.E. and Ornelas-García, C.P. (2023)

Phylogeographic relationships and morphological evolution between cave and surface Astyanax mexicanus populations (De Filippi 1853) (Actinopterygii, Characidae)

Lloyd, E., Privat, M., Sumbre, G., Duboue, E.R. and Keene, A.C. (2023)

A protocol for whole-brain Ca2+ imaging in Astyanax mexicanus, a model of comparative evolution

Zhang, J.H., Long, R., Jing, Y.Y., Zhang, P., Xu, Y., Xiong, W., Zhu, Y.Q. and Luo, Y.P. (2023)

Loss of behavioral stress response in blind cavefish reduces energy expenditure

Bucher, L. and Gross, J. (2023)

Mexican cavefish living in hypoxic environments exhibit changes in expression of oxygen-transporters

Lomheim, H.J., Rodas, L.R., Mulla, L., Freeborn, L., Sun, D.A., Sanders, S.A. and Protas, M.E. (2023)

Transcriptomic analysis of cave, surface, and hybrid samples of the isopod Asellus aquaticus and identification of chromosomal location of candidate genes for cave phenotype evolution

Culver, D.C., Kowalko, J.E. and Pipan, T. (2023)

Natural selection versus neutral mutation in the evolution of subterranean life: A false dichotomy?

Jiménez, A.G., Nash-Braun, E. and Meyers, J.R. (2023)

Chronic thermal acclimation effects on critical thermal maxima (CTmax) and oxidative stress differences in white epaxial muscle between surface and cave morphotypes of the Mexican cavefish (Astyanax mexicanus)

Yang, X., Song, Y., Zhang, R., Yu, M., Guo, X., Guo, H., Du, X., Sun, S., Li, C., Mao, X., Fan, G. and Liu, X. (2023)

Unraveling the genomic features, phylogeny and genetic basis of tooth ontogenesis in Characiformes through analysis of four genomes

Berning, D. and Gross, J.B. (2023)

The constructive evolution of taste in Astyanax cavefish: A review.

Gross, J.B. and Powers, A.K. (2023)

Reinterpreting the work of Charles Breder: Sensory neuromasts and orbital skeleton variation in eyeless Astyanax cavefish

Blin, M., Valay, L., Kuratko, M., Pavie, M. and Rétaux, S. (2023)

Evolution of olfactory sensitivity, preferences and behavioral responses in Mexican cavefish: fish personality matters

Kuball, K., Fernandes, V.F.L, Takagi, D. and Yoshizawa, M. (2023)

Blind cavefish evolved food-searching behavior without changing sensory modality compared with sighted conspecies in the dark

Olsen, L., Krishnan, J., Banks, C., Hassan, H. and Rohner, N. (2023)

Circadian rhythm disruption is associated with skeletal muscle dysfunction within the blind Mexican cavefish

Arcila, D., Rincon-Sandoval, M., Hanson, W., Hart, P.B., González, V.L., Betancur-R, R. and Bichuette, M.E. (2023)

Transcriptomic analysis of the Brazilian blind characid, Stygichthys typhlops, reveals convergent selection with Astyanax mexicanus and other cavefishes

Iwashita, M., Tran, A., Garcia, M., Cashon, J., Burbano, D., Salgado, V., Hasegawa, M., Balmilero‑Unciano, R., Politan, K., Wong, M., Lee, R.W.Y. and Yoshizawa, M. (2023)

Metabolic shift toward ketosis in asocial cavefish increases social‑like affinity

Cardozo, M.J., Sánchez-Bustamante, E. and Bovolenta, P. (2023)

Optic cup morphogenesis across species and related inborn human eye defects

Biswas, T., Rajendran, N., Hassan, H., Zhao, C. and Rohner, N. (2023)

3D spheroid culturing of Astyanax mexicanus liver-derived cell lines recapitulates distinct transcriptomic and metabolic states of in vivo tissue environment

Alunni, A., Pierre, C., Torres-Paz, J., Clairet, N., Langlumé, A., Pavie, M., Escoffier-Pirouelle, T., Leblanc, M., Blin, M. and Rétaux, S. (2023)

An Astyanax mexicanus mao knockout line uncovers the developmental roles of monoamine homeostasis in fish brain

Olsen, L. plus 17 others (2023)

Metabolic reprogramming underlies cavefish muscular endurance despite loss of muscle mass and contractility

Staeger, S. (2023)

Investigating neuroanatomical evolution through proliferative cells in the Astyanax mexicanus

Moran, R.L., Richards, E.J., Ornelas-García, C.P., Gross, J.B., Donny, A., Wiese, J., Keene, A.C., Kowalko, J.E., Rohner, N. and McGaugh, S.E. (2023)

Selection-driven trait loss in independently evolved cavefish populations

Espinasa, L., Pavie, M. and Rétaux, S. (2023)

Protocol for lens removal in embryonic fish and its application on the developmental effects of eye regression

Legendre, L., Espinasa, L., Lacaille-Múzquiz, J.-L., Alaniz-Garfia, G., Ornelas-García, P. and Rétaux, S. (2023)

First record of a freshwater cave sponge (Porifera, unknown gen. and sp.) in a cave inhabited by Astyanax cavefish in the Sierra de El Abra, San Luis Potosí, Mexico

Boyle, M.J., Arledge, S., Thomas, B., Tomkins, J.P. and Guliuzza, R.J. (2023)

Testing the cavefish model: An organism-focused theory of biological design

Frøland Steindal, A., Yamamoto, Y. and Whitmore, D. (2023)

Blind fish have cells that see light

Sifuentes-Romero, I., Aviles, A.M., Carter, J.L., Chan-Pong, A., Clarke, A., Crotty, P., Engstrom, D., Meka, P., Perez, A., Perez, R., Phelan, C., Sharrard, T., Smirnova, M.I.,Wade, A.J. and Kowalko, J.E. (2023)

Trait loss in evolution: What cavefish have taught us about mechanisms underlying eye regression

Miranda-Gamboa, R., Espinasa, L., Verde-Ramírez, M.A., Hernández-Lozano, J., Lacaille, J.L., Espinasa, M., Ornelas-García, C.P. (2023)

A new cave population of Astyanax mexicanus from Northern Sierra de El Abra, Tamaulipas, Mexico

Espinasa, L., Diamant, R., Vinepinsky, E. and Espinasa, M. (2023)

Evolutionary modifications of Astyanax larval prey capture (LPC) in a dark environment

Perera, P.P., Guerra, D.P. and Riddle, M.R. (2023)

The Mexican Tetra, Astyanax mexicanus, as a model system in cell and developmental biology

Olsen, L., Hassan, H., Keaton, S. and Rohner, N. (2023)

The Mexican cavefish mount a rapid and sustained regenerative response following skeletal muscle injury

Pavlova, V.V. and Krylov, V.V. (2023)

Cavefishes in chronobiological research: A narrative review.

Stowers Institute (2023)

Stowers scientists use cavefish to learn about metabolism and the evolutionary basis of being a couch potato

Santacruz, A., Hernández-Mena, D., Miranda-Gamboa, R., Pérez-Ponce De León, G. and Ornelas-García, P. (2023)

Host-parasite interactions in perpetual darkness: Macroparasite diversity in the cavefish Astyanax mexicanus

Di Lorenzo, T., Avramov, M., Galassi, D.M.P., Iepure, S., Mammola, S., Reboleira, A.S.P.S and Hervant, F. (2023)

Chapter 20. Physiological tolerance and ecotoxicological constraints of groundwater fauna

Casane, D., Saclier, N., Policarpo, M., François, C. and Lefébure, T. (2023)

Chapter 17. Evolutionary genomics and transcriptomics in groundwater animals

Policarpo, M., Legendre, L., Germon, I., Lafargeas, P., Espinasa, L., Rétaux, S. and Casane, D. (2023)

The nature and distribution of non-functional alleles suggest only two independent events at the origins of Astyanax mexicanus cavefish populations.

Borowsky, R.L. (2023)

Selection maintains the phenotypic divergence of cave and surface fish

Jiménez, A.G., Nash-Braun, E. and Meyers, J.R. (2023)

White epaxial muscle aerobic and anaerobic potential and muscle fiber structure in surface and cave morphotypes of the Mexican cavefish (Astyanax mexicanus)

Kozol, R.A., Yuiska, A., Han, J.H., Tolentino, B., Lopatto, A., Lewis, P., Paz, A., Keene, A.C., Kowalko, J.E. and Duboue, E.R. (2023)

Novel husbandry practices result in rapid rates of growth and sexual maturation without impacting adult behavior in the blind Mexican cavefish

Batista da Silva, I., Barbosa, D.A., Kavalco, K.F., Nunes, L.R., Pasa, R. and Menegidio, F.B. (2023)

Discovery of putative long non‑coding RNAs expressed in the eyes of Astyanax mexicanus (Actinopterygii: Characidae)

Garduño-Sánchez, M.A.A., de Jesus-Bonilla, V., Perea, S., Miranda-Gamboa, R., Herrera- García, A., de la Maza Benignos, M. and Ornelas-García, C.P. (2023)

Mitochondrial phylogeography and molecular evolution of the rhodopsin visual pigment in troglobitic populations of Astyanax mexicanus (De Filippi, 1853)

Baumann, D.P. and Ingalls, A. (2023)

Cryopreservation of the Mexican Tetra Astyanax mexicanus

Lakhiani, R., Shanavas, S. and Melnattur, K. (2023)

Comparative biology of sleep in diverse animals

Legendre, L., Rode, J., Germon, I., Pavie, M., Quiviger, C., Policarpo, M., Leclercq, J., Père, S., Fumey, J. Hyacinthe, C. et al. (2023)

Genetic identification and reiterated captures suggest that the Astyanax mexicanus El Pachón cavefish population is closed and declining

Blin, M., Rétaux, S. and Torres-Paz, J. (2023)

Whole-mount multicolor fluorescent labeling by In situ hybridization in Astyanax mexicanus embryos and larvae

Castillo-Casas, J.M., Caño-Carrillo, S., Sánchez-Fernández, C., Franco, D. and Lozano-Velasco, E. (2023)

Comparative analysis of heart regeneration: Searching for the key to heal the heart—Part I: Experimental injury models to study cardiac regeneration

Gil Galvez, A. (2023)

The role of Cis-Regulatory elements during evolution at different evolutionary time points

Hyacinthe, C., Attia, J., Schutz, E., Lego, L., Casane, D. and Retaux, S. (2023)

Acoustic signatures in Mexican cavefish populations inhabiting different caves

Sifuentes-Romero, I., Ferrufino, E. and Kowalko, J.E. (2023)

Application of CRISPR-Cas9 for functional analysis in A. mexicanus

Weinberger, M. and Riley, P.R. (2023)

Animal models to study cardiac regeneration

Lloyd, E., Kozol, R.A., Duboue, E.R. and Keene, A.C. (2023)

Immunohistochemistry and in vivo neural imaging in A. mexicanus

Gross, J.B., Berning, D., Phelps, A. and Luc, H. (2023)

An analysis of lateralized neural crest marker expression across development in the Mexican tetra, Astyanax mexicanus

Wilkens, H. (2023)

The general significance of variability in cave regressive traits for evolution

Strand, S.H. (2023)

The impact of temperature on developmental morphology and LR Asymmetry in Astyanax mexicanus

Hutton, P., Lloyd, E., Dotson, M. and Keene, A.C. (2023)

Sleep behavior analysis in Astyanax mexicanus

Atukorallaya, D., Bhatia, V. and Gonzales, J. (2023)

Divergent tooth development mechanisms of Mexican tetra fish (Astyanax mexicanus) of Pachon cave origin

Powers, A.K., Hyacinthe, C., Riddle, M.R., Kim, Y.K., Amaismeier, A., Thiel, K., Martineau, B., Ferrante, E., Moran, R.L., McGaugh, S.E., Boggs, T.E., Gross, J.B. and Tabin, C.J. (2023)

Genetic mapping of craniofacial traits in the Mexican tetra reveals loci associated with bite differences between cave and surface fish

Iwashita, M. and Yoshizawa, M. (2023)

A new method to analyze nonvisual-based social-like interactions in asocial cave fish

Olsen, L., Krishnan, J., Banks, C., Hassan, H. and Rohner, N. (2023)

Circadian rhythm disruption linked to skeletal muscle dysfunction in the Mexican Cavefish

Yang, Y., Xu, T., Conant, G., Kishino, H., Thorne, J.L and Ji, X. (2023)

Interlocus gene conversion, Natural Selection, and Paralog Homogenization

Olsen, L., Alexander, R., Krishnan, J. and Rohner, N. (2023)

A generalist’s guide to quantifying swimming behavior within traditional and nontraditional teleost models

Gross, J.B., Boggs, T.E., Rétaux, S. and Torres-Paz, J. (2023)

Chapter 15. Developmental and genetic basis of troglomorphic traits in the teleost fish Astyanax mexicanus

Enriquez ,M.S., Swanson, N., Putland, R.L., Tait, T., Gluesenkamp, A.G., McGaugh, S.E. and Mensinger, A.F. (2023)

Evidence for rapid divergence of sensory systems between Texas populations of the Mexican tetra (Astyanax mexicanus)

Riddle, M., Nguyen, N., Nave, M., Peuß, R., Maldonado, E., Rohner, N. and Tabin, C. (2023)

Genetic adaptation shapes gut microbiome composition in Astyanax mexicanus

Hyacinthe, C. (2023)

Recording acoustic behavior in Astyanax mexicanus fish: Acquisition, decryption, and interpretation

Tidswell, B.K. (2024)

Vision and the lateral line: Comparative behavioral studies of fish schooling

Di Rosa, V., Frigato, E., Negrini, P., Cristiano, W., López-Olmeda, J.F., Rétaux, S., Sánchez-Vázquez, F.J., Foulkes, N.S., Bertolucci, C. (2024)

Sporadic feeding regulates robust food entrainable circadian clocks in blind cavefish

Boggs, T. (2024)

Adaptation to hypoxia in the blind Mexican cavefish, Astyanax mexicanus

Boggs, T.E. and Gross, J.B. (2024)

Gill morphology adapted to oxygen‐limited caves in Astyanax mexicanus

Alkafaween, E., Hassanat, A., Essa, E. and Elmougy, S. (2024)

CSGA: A dual population Genetic Algorithm based on Mexican Cavefish genetic diversity

Hernandez Lozano, J., Garita Alvarado, C.A., Munguia Stayer, R., Garduno Sanchez, M.A. and Ornelas Garcia, C.P. (2024)

Parallel phenotypic evolution of two independent cavefish lineages of Astyanax mexicanus (De Filippi, 1854) (Characiformes: Characidae)

Accorsi, A., Guo, L., Marshall, W.F., Mommersteeg, M.T.M. and Nakajima, Y.-I. (2024)

Extraordinary model systems for regeneration

Keene, A.C., Duboue, E.R., Foulkes, N.S. and Bertolucci, C. (2024)

Evolved loss of sleep and circadian rhythms in cavefish

Pozo-Morales, M., Cobham, A.E., Centola, C., McKinney, M.C., Liu, P., Perazzolo, C., Lefort, A., Libert, F., Bai, H. Rohner, N. and Singh, S.P. (2024)

Starvation resistant cavefish reveal conserved mechanisms of starvation induced hepatic lipotoxicity

Wiese, J., Richards, E., Kowalko, J.E. and McGaugh, S.E. (2024)

Quantitative trait loci concentrate in specific regions of the Mexican cavefish genome and reveal key candidate genes for cave-associated evolution

Cobham, A.E. and Rohner, N. (2024)

Unraveling stress resilience: Insights from adaptations to extreme environments by Astyanax mexicanus cavefish

Berning, D., Heerema, H. and Gross, J.B. (2024)

The spatiotemporal and genetic architecture of extraoral taste buds in Astyanax cavefish

Folgueira, M. and Clarke, J.D.W. (2024)

Telencephalic eversion in embryos and early larvae of four teleost species

Cardoso, A.L., Oliveira, J.I.N., Climaco, J.P.S., Venturelli, N.B., Moreira, D.D.N. and Martins, C. (2024)

Conditions for establishing fin primary cell cultures in a wide range of ray‑finned fishes

Di Lorenzo, T., Mori, M. and Simčič, T. (2024)

Metabolic rates of groundwater species as a function of body mass and temperature

Biswas, T., Hassan, H. and Rohner, N. (2024)

Potential role of microRNAs in regulating transcriptional profile, and sculpting development and metabolism in cavefish

Di Lorenzo, T., Mori, N. and Simčič, T. (2024)

Dataset for “Metabolic rates of groundwater species as a function of body mass and temperature”

Swaminathan, A., Xia, F. and Rohner, N. (2024)

From darkness to discovery: evolutionary, adaptive, and translational genetic insights from cavefish

Biswas T., Rajendran N., Hassan H., Li H., Zhao C. and Rohner N. (2024)

3D spheroid culturing of Astyanax mexicanus liver-derived cell lines recapitulates distinct transcriptomic and metabolic states of in vivo tissue environment.

Espinasa, L., Tatarsky, R.L., Girard, M.K., Sandone, M., Rétaux, S. and Espinasa, J. (2024)

Population size and spatial distribution of the Mexican blind cavefish (Astyanax) within the caves

Manning, A.E., Grunwald, H., Moran, R., Rodriguez-Morales, R., Powers, A.K., McGaugh, S. and Kowalko, J.E. (2024)

Defining the unseen: Population-specific markers for Astyanax mexicanus blind cavefish

Blin, M., Valay, L., Kuratko, M., Pavie, M. and Rétaux, S. (2024)

The evolution of olfactory sensitivity, preferences, and behavioral responses in Mexican cavefish is influenced by fish personality.

Lunghi E. and Bilandžija H. (2024)

Telomere length and dynamics in Astyanax mexicanus cave and surface morphs

Juan, T. and Ebnicher, G. (2024)

In preprints: Shh signaling activity predicts cardiac laterality in Astyanax mexicanus populations

Rodríguez-Morales, R. (2024)

Sensing in the dark: Constructive evolution of the lateral line system in blind populations of Astyanax mexicanus

Rétaux, S. and Yamamoto, K. (2024)

Evolution of fish brains and behaviors: how many ways to generate the same outcomes?

Kuball, K., Fernandes, V.F.L., Takagi, D. and Yoshizawa, M. (2024)

Blind cavefish evolved higher foraging responses to chemo- and mechanostimuli

Fang, Z. (2024)

Investigating dentition development and replacement in Mexican tetra two subforms

Espinasa, J. and Espinasa, L. (2024)

Cavefish dorsoventral axis angle during wall swimming: laterality asymmetry

Melo, B.F., Ota, R.P., Benine, R.C., Carvalho, F.R., Lima, F.C.T., Mattox, G.M.T., Souza, C.S., Faria, T.C., Reia, L., Roxo, F.F., Valdez-Moreno, M., Near, T.J., et al. (2024)

Phylogenomics of Characidae, a hyper-diverse Neotropical freshwater fish lineage, with a phylogenetic classification including four families (Teleostei: Characiformes)

Subterranean Fishes of the World

An account of the subterranean (hypogean) fishes with a bibliography from 1436.

Journal Article